-
Hi there,
I've been struggling to fix an error with your tool RE: missed pHF data. It seems numbat only pHF data for chromosomes 1-2 and filters all other SNPs - probably due to all cM values for o…
-
Hi,
I am using `pandora compare` to call out the variants after building the pan-genome reference graphs and indexing them using `pandora index`. Although I am using multiple threads, it works with…
-
Thank you for creating this valuable tool. We've found it to be the best for analyzing our data compared to other tools, but we've noticed a discrepancy in genotyping the KIR2DL5A/B genes. While other…
-
Hi,
Thanks to the authors for developing this method!
I was looking for a method for further confirmation of CNV genotypes. I'm using samplot for visual confirmation, which is very helpful for rare…
-
Hi! I have a huge 10X scRNA-seq mouse data (~60Gb BAM file | ~50K cells from 12 mice) that I am trying to run on cellSNP-lite. I compiled cellSNP-lite in an HPC environment and I am running it from th…
-
Hi
When I run the BayesTyper v1.4, I got this error. Could anyone please help me to fix this? Thanks
[14/02/2019 06:13:18] You are using BayesTyper (v1.4)
[14/02/2019 06:13:18] Seeding pseudo…
-
Create a fingerprinting python module, probably using click from python to have multiple subcommands.
Here are things that we talked about @maysunh
Things to do:
- [ ] Genotyping
- …
-
This isn't supported in Zarr yet but because it is in Dask and the majority of genotyping data sets have major alleles with high frequency, there may be some significant speedups resulting from a spar…
-
In our clinical lab, the previous bioinformatician installed Pisces 5.2.11.163. I have also seen this version in issues submitted by other people. However, I am not able to find that release. Where is…
-
Meta-issue. Please spin out issues and self-assign.
For the first cut, let's organize WDLs and resources for a pipeline that takes
**Inputs**
- the joint short-variant callset
- the integrated…