bioinformatics-centre BayesTyper issues

bioinformatics-centre / BayesTyper

A method for variant graph genotyping based on exact alignment of k-mers

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With bayestyper genotyping SV, the genotype rate decreases as the depth of sample sequencing increases.

#53 yangqimeng99 opened 2 months ago
0
If executed multiple times, will the result of the data generated be the same each time?

#52 123xyl opened 1 year ago
5
What is the open source protocol for bayesTyper?

#51 123xyl opened 1 year ago
1
genotype failed: Assertion `parameters.first > 0' failed.

#50 Jesson-mark opened 1 year ago
3
how to generate test cases

#49 123xyl opened 1 year ago
0
downloading variation priors fails

#48 shokrof opened 1 year ago
3
how to get test case

#47 123xyl opened 1 year ago
0
Questions on data bundle and SV genotyping

#46 Han-Cao opened 1 year ago
1
Classifying kmers error with bayesTyper 1.4.1 and 1.5

#45 karenfeng opened 1 year ago
1
how to run bayestyper

#44 123xyl opened 1 year ago
2
Where are the test cases

#43 123xyl opened 1 year ago
1
when cmake, Could NOT find Boost (missing: Boost_INCLUDE_DIR iostreams program_options system filesystem serialization)

#42 123xyl opened 1 year ago
1
Identifying SV type from output

#41 janawold1 opened 2 years ago
1
A question about VCF format of results from the 'genotype' function.

#40 zhiyongli1995 opened 2 years ago
1
Genotyping for the inversions

#39 shehongbing opened 2 years ago
2
Genotyping 500 samples

#38 Sherry520 closed 3 years ago
0
Questions about bayesTyperTools combine

#37 zhiyongli1995 opened 3 years ago
4
A question about convertAllele.

#36 zhiyongli1995 closed 3 years ago
0
Question of the format of VCF file for BayesTyper.

#35 zhiyongli1995 closed 3 years ago
2
[feature request] Genotyping more than 500 samples

#34 Sherry520 opened 3 years ago
3
byesTyper cluster wrong

#33 masen1991 closed 3 years ago
4
Running BayesTyper on custom VCF file

#32 Parsoa opened 4 years ago
11
manta_run_workflow fails with Unexpected character in reference sequence.

#31 Parsoa opened 4 years ago
0
terminate called after throwing an instance of 'std::out_of_range'

#30 Parsoa closed 4 years ago
4
ChildIOException: File/directory is a child to another output

#29 Parsoa opened 4 years ago
9
Combine assertion error

#28 jjfarrell closed 4 years ago
1
Feature Request- Add in gnomAD SV call set to prior

#27 jjfarrell opened 4 years ago
1
Error during combine of Manta SV sites

#26 jjfarrell opened 4 years ago
5
Feature Request for prior vcf with bayesTyperTools combine

#25 jjfarrell opened 4 years ago
1
Cram Support?

#24 jjfarrell closed 4 years ago
2
Assertion error when run bayesTyper cluster

#23 qingyun-mei closed 4 years ago
1
how to prepare canon.fa and decoy.fa for non-human organism?

#22 qingyun-mei closed 4 years ago
2
Assertion `genome_seqs_it != genome_seqs.end()' failed.

#21 jjfarrell closed 4 years ago
6
Genotyping error on one cluster

#20 jjfarrell closed 4 years ago
3
ConvertAllele and Variant normalization

#19 malmarri opened 4 years ago
3
SV Typing only

#18 jjfarrell closed 4 years ago
4
bayestyper cluster assertion failure

#17 cheesemania closed 4 years ago
2
Genotyping assertion failure

#16 prithikasritharan opened 4 years ago
6
Running BayesTyper with a different kmer length

#15 stephaniemyan closed 5 years ago
1
error bayestyper cluster

#14 Jordi-V opened 5 years ago
31
Classifying kmers error with bayesTyper genotype

#13 stephaniemyan closed 5 years ago
2
genotyping error: intercluster_diploid_kmer_stats.at(sample_idx).at(bias _idx).front().getCount() == 0

#12 biobai opened 5 years ago
1
Error with bayesTyperTools combine

#11 stephaniemyan opened 5 years ago
3
Genotyping 808 samples

#10 Jordi-V opened 5 years ago
3
filtering on merged samples

#9 cheesemania opened 5 years ago
1
added "*" in ALT after genotyping

#8 songtaogui opened 5 years ago
1
Error when combining vcfs using bayesTyperTools combine

#7 songtaogui closed 5 years ago
4
convertAllele assertion failure

#6 hannespetur opened 5 years ago
6
bayesTyperTools combine Assertion `contig_id_to_idx_it != contig_id_to_idx.end()' failed

#5 martinghunt closed 6 years ago
2
What to do with smaller genomes?

#4 iqbal-lab opened 6 years ago
8