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A Nifti version of the atlases together with an FSL compatible XML file describing the labels would greatly improve the usefulness of this resource!
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Greetings,
I recently found this tool (thanks to a Neurostars answer by @gdevenyi) and have been testing it with a mouse model of neurodegeneration (ex-vivo imaging, 75 microns). I based things on …
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Ice&Fire Questline reworked with categories for easier manipulation.
PASTEBIN FOR RAW HASHTAG DATA: https://pastebin.com/aAzEV8HJ
BASICS:
# Knowledge is power
With a little luck you can find a dra…
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The title is quite self explanatory. More Passive mobs should be added.
Yes, I know Ice and Fire is meant to be challenging, and I acknowledge the fact that a lot of mobs are tamable; but Ice and F…
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- filtered volume terms from [unreviewed EFO-OBA mappings list](https://github.com/obophenotype/bio-attribute-ontology/blob/master/src/mappings/oba-efo-unreviewed.dosdp.tsv)
- will add using [entity_…
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Reproducible computational environments for research
- Virtual environments, docker, git
Neural data handling and preprocessing
- Spiking data
- LFP
- Calcium imaging
- Widefield imaging
Single c…
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The list below are all EFO (measurement) terms with volume in the name. Most of them refer to an AS in Uberon.
From this list:
* generate a list of Uberon terms that map to volume terms. --> ex…
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**🚀 Feature**
Add remap labels kwarg to RandomFlip.
**Motivation**
When an image is flipped around the sagittal plane, anatomical labels in a label map lose meaning. For example, if a l…
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Thanks for these wonderful tools. I've been experimenting with your LFP pre-processing on my own data, and found a couple things that might be useful to you. Here is my understanding of your process:
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Dear @krokicki,
I was wondering if you could upload the custom-trained cellpose model that was used to segment the mouse embryos in the [Cellpose_MouseEmbryo_3D](https://github.com/liulabspatial/c…