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In order to interpret a measurement correctly, it is crucial to know if any treatments were applied at the time of measurement, and if so, which treatments and over what period of time. Currently, tre…
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Here are issues I have been experiencing with linkml-cookiecutter:
Per https://github.com/linkml/linkml-project-cookiecutter/issues/51 we have limited control over linkml generators via `gen-proje…
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If we look at the output of `gen-shex` on the [kitchen sink schema](https://github.com/linkml/linkml/blob/main/tests/test_generators/input/kitchen_sink.yaml) in our testing framework by running the fo…
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## In the berkeley-schema-fy24
Some of these may be the parents of some sub-property that is associated with a class
```python
from linkml_runtime import SchemaView
from linkml_runtime.utils.s…
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LinkML provides facilities for automatic generation of web documentation about a model, from the annotation of the model in the core data schema (YAML) file. A recent example of such generated docum…
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from https://github.com/microbiomedata/submission-schema/blob/main/project.Makefile
```make
examples/output/README.md: src/nmdc_submission_schema/schema/nmdc_submission_schema.yaml \
src/data/inv…
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I have an abstract class (`Abstract`) in which an attribute (`custom`) has the type of a custom class (`Custom`). In a child class of the abstract class (`Implementation`), I want to define the type …
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Hi @mbthornton-lbl and @pkalita-lbl
I could use some of your help with an example file that was passing in the [nmdc-schema for the past 6 months](https://github.com/microbiomedata/nmdc-schema/bla…
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OAK has a new but very experimental validation interface:
https://incatools.github.io/ontology-access-kit/interfaces/validator.html
We should start exploring that for QC rather than adding sparq…
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An Example Data Workflow would automatically pull data from nodes, transform it into CRDCH instance data using the Python Data Classes from cancerDHC/ccdhmodel, and then validate that CRDCH instance d…