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cancerDHC
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tools
A repository for the work of the Tools workstream for CCDH
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Improve CRDCH artifact generation
#39
gaurav
opened
2 years ago
0
Improve CRDCH model documentation
#38
gaurav
opened
2 years ago
0
Improve workflows between CRDCH model generation and CCDH Terminology Service
#37
gaurav
opened
2 years ago
1
Develop a complete Example Data Workflow for CRDCH
#36
gaurav
opened
2 years ago
1
Look into whether we can incorporate valuesets into the OLS instance we have
#35
gaurav
opened
3 years ago
3
Put the "Entity" class back into the model
#34
gaurav
closed
3 years ago
2
Label tasks that generate publicly visible deliverables
#33
seandavi
closed
3 years ago
1
Build a pipeline for converting CRDC-H from Google Sheets to LinkML
#32
gaurav
closed
3 years ago
6
data mapping service using linkml value sets
#31
balhoff
opened
3 years ago
2
define validation approach for using terminology value sets with linkml
#30
balhoff
closed
3 years ago
1
create runner for applying linkml validation to CRDC-H data
#29
balhoff
closed
3 years ago
1
specify formats for data adhering to CRDC-H model
#28
balhoff
closed
2 years ago
5
create example CRDC-H data in JSON/linkml
#27
balhoff
closed
3 years ago
4
DICOM SNOMED to ontology mappings master ticket
#26
gaurav
closed
3 years ago
1
Test grouping terms in mapping tool via NCImt hierarchy
#20
balhoff
opened
3 years ago
5
Incorporate additional ontologies into DICOM SNOMED to NCIt mapping
#19
balhoff
closed
3 years ago
5
PDC: Biggest challenge is transforming source data to GDC or PDC data dictionary – tools for data transformation (structured format) will be useful
#18
llchristopherson
closed
2 years ago
1
Build a workflow for integrating example IDC data against standardized vocabularies; 2 imaging MVP data sets to test CEDAR/other tools for data annotation
#17
llchristopherson
closed
3 years ago
2
Identify minimum metadata currently used by CRDC nodes
#16
gaurav
closed
2 years ago
8
Choose a format for publishing harmonized datasets
#15
gaurav
closed
2 years ago
6
Develop strategy and plan aligned with CRDC needs
#14
gaurav
closed
2 years ago
1
Develop tools for metadata mapping, transformation and validation
#13
gaurav
closed
3 years ago
3
Work with CDA to understand/help define their needs for ingesting/accessing the model and terminology support
#12
gaurav
opened
3 years ago
4
Tools to enable stakeholders to implement CRDC-H (discussion with Seven Bridges, CDA)
#11
gaurav
closed
3 years ago
2
Adapt tools currently evaluated as needs are defined
#10
gaurav
closed
3 years ago
2
Discuss adaption and implementation of Metadata Validator with CDS
#9
gaurav
closed
2 years ago
3
Discuss with PDC possible use of CEDAR/other tools for data annotation & approaches/tools for data transformation
#8
gaurav
closed
2 years ago
1
Incorporate ontologies into DICOM SNOMED to NCIt mapping
#7
gaurav
closed
3 years ago
3
Implement tool supporting use of SNOMED mappings
#6
balhoff
closed
3 years ago
1
Implement boomer workflow for data model harmonization
#5
balhoff
opened
3 years ago
5
Build a workflow for integrating example IDC data against standardized vocabularies
#4
gaurav
closed
3 years ago
11
Choose a format for publishing mappings
#3
gaurav
closed
3 years ago
2
review of CDS data and think about how it would be used to inform the requirements
#2
nicolevasilevsky
closed
3 years ago
2
Need to find out where infrastructure will be ultimately hosted
#1
nicolevasilevsky
closed
3 years ago
4