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Hey,
I am trying to use the “alignSpectra” function for m/z calibration of mass spectrometry imaging data. The data are either read in as imzML files or directly constructed from the mass spectra by…
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Savitzky Golay seems to be a commonly used algorithm for MALDI-TOF MS processing. Like https://github.com/OpenChrom/OpenTyper/issues/3 either port a function which already exists for chromatograms or …
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pdc1 doesn't fit standard product naming, it's names for the process when it should be named after the complex.
although the human isn't annotated, it says
http://www.uniprot.org/uniprot/Q6P2E9
…
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At least the Bruker flex file format #18 contains the information and we also parse and save it:
```java
[...]
// MASS SPECTRUM (CENTROID OR PROFILE)
value = extractValue(ACQU_DATATYPE, line);…
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The current tree file viewer is a bit inconvenient. https://bugs.eclipse.org/bugs/show_bug.cgi?id=496774 It requires users to navigate manually to the folder where data is located and for MALDI-TOF MS…
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Dear Bo Wen,
First of all, let me congratulate you for this awesome work.
I’m trying to use your R package, metaX but, unfortunately I was unable to install it neither in Windows nor in OSX.
It gi…
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When MALDI MS2 spectra are dropped in the specstylus, they are annotated as MS1 spectra.
When opened in specviewlite, the data is centroided. Should be able to view profile data.
In addition, y…
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Everytime I try to use the plot function extracting data from txt files in workspace, I get the following error messages:
Error in plot.window(...) : endliche 'ylim' Werte nötig
In addition: Warn…
ghost updated
6 years ago
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It would be great to have a function to detect if a spectrum is in profile mode of centroided. Are there any examples of this in the literature? Could we infer this from an `mzML`/`mzXML` file?
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The task is to create rules for automatic testing of the solution.