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Hi,
I am trying to run PAPRICA on a linux server.
I have installed all the dependencies, but when I try to run ```./paprica-run.sh test.bacteria bacteria``` I get the following error:
```
pplacer…
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Placement of Xenophidion within Tropidophiidae has been refuted; genus is now considered to be in its own family Xenophidiidae or within Bolyeriidae, but molecular evidence shows wide separation from …
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Add more information to the description panes and improve their usability (by making them bigger and moving the copy button).
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I have seen no evidence online which classifies Acanthokara outside the true onychophorans (Euonychophora), so I don't know where this deep placement is coming from.
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| Metadata | Do not edit below…
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Hi Everybody!
I ran into an issue when trying to plot taxa and samples in ordination plots using DPCoA as ordination method.
If the sample counts are not transformed but just normalized (i.e. relat…
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Please remove the restriction that forbids annotation to terms marked 'Do not manually annotate'.
(Note that we wan to keep the restriction on 'Do not annotate'. )
Thanks, Pascale
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If the user selects 'Feedback on tree of life' then some effort should be made to collect from the user a URL of an authoritative source (preferably a DOI). This is a requirement we have on taxonomy c…
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Hi again,
I got to complete my test run with the dataset from one of my replicate samples but based on the description of the outputs from the `graft` option in the [wiki](https://github.com/geronimp/…
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Little to no information exists as to what the different OTT flags mean. The [wiki page](https://github.com/OpenTreeOfLife/reference-taxonomy/wiki/taxon-flags) points to [taxomachine code](https://git…
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from @fauziharoon running 3.0:
```
$ graftM graft --forward ../prinseq_trimmed_metagenome_reads/sample01.1.prinseq.fasta --threads 20 --graftm_package ~/DB/graftm_packages/16S_82_hmmaligned_gpkg
…
wwood updated
8 years ago