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geronimp
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graftM
GraftM - Rapid community profiles from metagenomes
http://geronimp.github.io/graftM/
GNU General Public License v3.0
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Difference between search_otu_table and combined_count_table. Multiple hmm searches.
#285
robcli
opened
1 month ago
0
low number of reads detected
#284
rzhan186
opened
7 months ago
0
An error was found that was difficult to resolve after manually reroot
#283
Five296
closed
8 months ago
5
CVE-2007-4559 Patch
#282
TrellixVulnTeam
closed
1 year ago
0
Remove unnessary conda dependencies
#281
AroneyS
closed
2 years ago
0
Remove backports.tempfile dependency
#280
AroneyS
closed
2 years ago
3
Fix diamond tests failing with each new version
#279
AroneyS
closed
2 years ago
6
Update conda env yaml
#278
AroneyS
closed
2 years ago
0
GraftM graft on big metagenome error
#277
steff1088
opened
2 years ago
4
account for no hits by non-decoy diamond db
#276
AroneyS
closed
2 years ago
0
Getting ZeroDivisionError when running with sample data
#275
melodymale
closed
2 years ago
7
What does 'Root' classification refer to?
#274
kattweigh
closed
2 years ago
2
fix create no-tree flag
#273
AroneyS
closed
3 years ago
0
add create no-tree flags
#272
AroneyS
closed
3 years ago
1
Update README.md
#271
AroneyS
closed
3 years ago
0
Create no tree
#270
AroneyS
closed
3 years ago
0
working with non-gene sequences
#269
bakeronit
opened
3 years ago
0
Issue running graftm create using docker
#268
erins1
opened
3 years ago
6
error using decoy_database with hmmsearch+diamond
#267
yboesch
opened
4 years ago
0
graftM create failed to root the tree
#266
x86lu
closed
3 years ago
9
graftM create error
#265
adityabandla
opened
4 years ago
6
Error: TC bit thresholds unavailable on model graftmrzdqhx.aln
#264
sarah872
opened
4 years ago
2
accept interleaved input
#263
jmeppley
closed
4 years ago
6
graftM create error while creating package
#262
ckeuschn
closed
5 years ago
3
Split challenge
#261
geronimp
closed
5 years ago
1
Geronimp jplace missing orfm names
#260
geronimp
closed
5 years ago
0
graft_package_version error on custom GraftM package
#259
fletchec99
opened
5 years ago
10
Can't find FastTreeMP
#258
alexximalayaunlv
closed
5 years ago
4
Fixes dec2018
#257
wwood
closed
5 years ago
2
search_only mode does not pair reads
#256
areejalsheikh
closed
5 years ago
2
KeyError on split sequence?
#255
maxemil
opened
6 years ago
0
Combined alignment file intermittently produced
#254
babakshaban
closed
5 years ago
15
Input Reads or Bins
#253
colbyga
opened
6 years ago
3
LookupError: unknown encoding: utf8
#252
s4351982
closed
6 years ago
3
Install Error using pip install
#251
colbyga
closed
6 years ago
0
update: Add option to regenerate diamond databases.
#250
wwood
closed
6 years ago
0
graftM create_why error in building tree?
#249
snmrna
opened
6 years ago
6
"graftM create" failed with SILVA due to unknown error
#248
jcmcnch
closed
6 years ago
13
graft: Use specified --input_sequence_type.
#247
wwood
closed
6 years ago
1
Missing options on docs for "graft"
#246
kyclark
closed
6 years ago
1
Remove seqmagick
#245
wwood
closed
6 years ago
1
Error with graft command
#244
SCarrSuperstar
closed
6 years ago
3
GraftM can now take >7 taxonomy ranks when creating a graftM package
#243
geronimp
closed
6 years ago
0
setup.py: Restrict seqmagick version to <0.7.0.
#242
wwood
closed
6 years ago
1
Leftover tempfiles
#241
wwood
closed
7 years ago
0
Geromimp renaming hmmer
#240
geronimp
closed
7 years ago
2
Bug fix for issue 198
#239
geronimp
closed
7 years ago
0
Not all temporary files are removed
#238
wwood
closed
7 years ago
0
Diamond 0.9
#237
wwood
closed
7 years ago
0
HMMsearch + DIAMOND
#236
ljmmm
opened
7 years ago
3
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