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Hi there,
Thank you very much for programming DeltaTE. It is very helpful for studying translation regulation.
Recently, I ran an analysis and got some buffered genes, but it is confusing why th…
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Hi, thank you for providing with us a great package.
I have been analyzing snRNA-seq data using Seurat, and now need to convert the data to Anndata format for the downstream analysis.
I tried to rep…
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**tl;dr**: 3-tag sequencing methods for bulk RNA samples contain known sample indices and UMIs and thus resembles sc-RNA-seq read formats. Do you have a recommendation on how to use Salmon and / or Al…
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Hi @sokratiag
I tried following the installation instructions in a clean conda environment but ran into compatibility issues with both default and paper-specific dependency lists. I am looking for…
vitkl updated
8 months ago
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OGS v1.2 is here: https://i5k.nal.usda.gov/bio_data/836678
The community wants to review these assemblies, and having the OGS on each haplotype will likely help. The OGS will need to be remapped fi…
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Hi Kipp,
I have met another issue when I analyzed my data (stranded total RNA-Seq) from FASTQ files. Only 9 circRNAs were detected but previously using BAMs as the starting point I found more than …
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https://doi.org/10.1101/262501
> Recent advances have enabled gene expression profiling of single cells at lower cost. As more data is produced there is an increasing need to integrate diverse data…
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Hello,
Thank you for the great package! It's really nice to give non-computational people ability to analyse RNA-seq data.
Though, is there any way to save analysis for future repeating? Any han…
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* Specific code commit: 7e8847fb36e4a64352247def0ff60fad095abcef
* Version of the web browser and OS: any
* Environment where the error occurred (Vagrant VM and site conf mode or AWS instance):
`t…
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### Description of feature
Differential splicing is a frequent consequence observed in RNA-Seq data. rMATS (https://rnaseq-mats.sourceforge.net/) is the most frequently used analysis tool, providing …