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LosicLab
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starchip
Detection of Circular RNA and Fusions from RNA-Seq
http://starchimp.readthedocs.io/en/latest/
MIT License
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Use of uninitialized value Error on Step1.sh and Step2.sh - normal?
#35
lauhinojosa
opened
1 year ago
0
rawdata/circs5.10.fasta yields "nnnnnnnnnnnn"
#34
xcwolfe
opened
1 year ago
0
Got Use of uninitialized value $fusionname in hash element error and empty output
#33
lconan
opened
2 years ago
0
StrandImbalance Calculation
#32
padwalmk
opened
3 years ago
0
Exon1 is greater than Exon2
#31
EricSHo
opened
4 years ago
0
parameters for fusion detection in amplicon based panel
#30
kerrypeck
opened
4 years ago
2
ERROR: too many digits/characters for integer conversion
#29
Apb58
closed
4 years ago
1
Empty output files
#28
QuentinLetourneur
opened
5 years ago
3
Multiple usability issues
#27
aubreybailey
opened
5 years ago
2
Unable to detect known fusions in PacBio data
#26
wolfgangrumpf
closed
5 years ago
6
run starchip-circles.pl problem
#25
lzhmercury
closed
5 years ago
1
Starting from FASTQ or BAM generates different results
#24
smshuai
opened
5 years ago
2
Step 2 error during annotation step
#23
smshuai
opened
5 years ago
9
Can I use repeatbed from ucsc if my STAR index was built with the gtf file from ensembl?
#22
shimw6828
opened
5 years ago
2
merge close circRNA
#21
huangziyan11111
closed
5 years ago
1
circRNA step2.sh bugs
#20
nongbaoting
closed
5 years ago
2
STARChip circles error when testing example data
#19
giuseppedelnapalle
closed
5 years ago
1
STAR chip-fusion: no fusions are detected
#18
pipasK
closed
5 years ago
3
trouble when using Step1.sh
#17
biozhao
closed
5 years ago
2
I don't know where the reference gtf should be placed，always point out “ can not open file”
#16
biozhao
closed
6 years ago
2
Unable to go on with Step2.sh
#15
Sealzad
closed
6 years ago
1
another trouble
#14
ChrisLou-bioinfo
closed
6 years ago
1
new troubles
#13
ChrisLou-bioinfo
closed
6 years ago
3
Issue with chimeric.out files
#12
RosannahCameron
closed
6 years ago
3
always appear those troubles
#11
ChrisLou-bioinfo
closed
6 years ago
2
here is a problem
#10
ChrisLou-bioinfo
closed
6 years ago
0
cannot find “Associated Gene Name” from ensembl biomart
#9
YiweiNiu
closed
6 years ago
4
Bedtools 2.26.0 Compatibility Issues
#8
dmaloneynygc
closed
6 years ago
1
comment on ms
#7
mikelove
closed
7 years ago
2
When no fusions detected
#6
kippakers
closed
7 years ago
0
Speed up count matrix generation
#5
kippakers
closed
7 years ago
0
Option to automatically set thresholds from read depth
#4
kippakers
closed
8 years ago
0
handle chromosome IDs more thoroughly
#3
kippakers
closed
8 years ago
0
GTF/GFF set up
#2
kippakers
closed
8 years ago
0
Use gene counts from STAR >=2.4.2
#1
kippakers
opened
8 years ago
1