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NTR: microbiome sequencing design
definition: The microbiome comprises all of the genetic material within a microbiota (the entire collection of microorganisms in a specific niche, such as the human …
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I'd like Vizbin to recognize masked sequences, i.e. ignore small letters. This would be useful to ignore e.g. 16S regions or other regions that obscure kmer profiles.
Usually, the user would supply…
a-h-b updated
4 years ago
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Hello!
I stumbled across your page while looking for others who have implemented a Banner data scraper that works with the "updated" design.
I maintain a [course scheduling web app](https://gith…
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Are there any recommended methods to obtain non-modified samples for sequencing (e.g. whole-genome amplification, or something else?)?
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Dear Kristoffer,
Thanks for developing and maintaining this tool.
I just want to ask a quick question on what to set as "readLength" on the importIsoformExpression function for Stringtie outputs f…
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Hello,
Is the WASP mapping pipeline suitable/recommended to be used on WGS data? I have followed some suggestions here to split some of the steps by chromosome since the files are large. However, f…
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Would be a useful feature to have hotkey sequences in addition to combos.
Ex: `dd` in vim to delete.
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The work is truly inspiring, as it integrates multiple useful tools for bioinformatics analysis, especially RNA sequencing. However, I found managing the packages to be quite challenging. It would be …
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Hello,
I want to call loops using FitHiC2 at 10kb resolution. Do you know how many valid paired reads are rquired by FitHiC2 to call loops at 10kb resolution? 300million valid paired reads?
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I'm using multiple sequences as described in your [blog post](http://playfulprogramming.blogspot.se/2015/01/sequence-control-with-trompeloeil-c.html). I'm wishing I had something to allow me to insert…