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*Backround:* I was cloning this repository to implement podman pull support in cwltool (since [done my @mr-c](https://github.com/common-workflow-language/cwltool/pull/1769) directly :pray:).
## Exp…
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Pybids crashes immediately when called in qsiprep-0.16.x. Even from a shell into qsiprep-0.16.1 using Singularity on a Linux workstation and calling pybids causes an immediate crash.
`$ singularit…
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I tried the conda installations step from website as well as docker image, I encounter the same numba error:
`numba.core.errors.LoweringError: Failed in nopython mode pipeline (step: nopython mode …
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Hi,
thank you for providing the package!
Just a minor suggestion for the convenience of use of the Docker Image.
I pulled it as a Singularity image on our cluster. Inside the container there …
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Hi,
I was recently introduced to PLIP in order to find all interacting Amino Acid residues between a protein and a ligand (PDBQT files that are within .tar collections). I ran these docking throug…
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Command: `singularity run build/Uno.sif preprocess.sh /candle_data_dir -h`
Host: lambda
Container: build from develop branch
```
wilke@lambda7:~/IMPROVE/Singularity$ singularity run build/Uno.…
wilke updated
10 months ago
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Hello! My nf-core/viralrecon run was halted due to R version clash. Please see the error message below -
ERROR ~ Error executing process > 'NFCORE_VIRALRECON:ILLUMINA:PLOT_MOSDEPTH_REGIONS_AMPLICON…
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```
What steps will reproduce the problem?
1. Run Endgame: Singularity v0.30.
What is the expected output? What do you see instead?
If run from the windowing system, the application bounces in the do…
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**Goal:**
For reproducibility, it would be great if we could recompute any run. For instance, a run with an old `scikit-learn` version.
**Challenges**
This is a complex problem. It might, for instanc…
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Hello!
I am trying to run FitHiChIP through Singularity as directed in the FitHiChIP documentation and I have encountered the following error message:
FATAL: Unable to handle library://tuvan/de…