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For **questions** about using SCENIC, please use the Discussions: https://github.com/aertslab/SCENIC/discussions/
> I am doing Scenic analysis, and my Anndata object does not have X_pca, while th…
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Hey,
it's more a question than an actual issue: I'm mapping a dataset with 32dims x 900000items with tsne on a multi-core machine but as tsne is single threaded i'm just using one core. Do you have an…
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This was given out last Wednesday 19th Sept.
First part was
Take word2vec on color meta data in pepper fry dataset and do tsne visualization (could use raster fairy)
This is due tomorrow 26th Sept…
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Hello to everyone,
I am running the CUML TSNE algorithm over the following dataset: https://github.com/oreilly-mlsec/book-resources/tree/master/chapter2/datasets .
The dataset has been loaded as …
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#### Describe the workflow you want to enable
Since numpy version 1.17.0, `np.random.RandomState` can accept the `._bit_generator` attribute as input in the constructor. This can be a plus for those …
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Hey!
Does anyone have idea why the lates version (master) is slower than the older version available in
https://github.com/danielfrg/tsne/tree/master/tsne/bh_sne_src
I profiled the issue with …
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The Rtsne function has arguments to customize perplexity ("perplexity") and number of iterations ("max_iter"). These can influence the separation of populations on the plot. In particular, I find usin…
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There is a profile where the user has used a different coordinate system in their paper and gEAR dataset (SWNE instead of tsne /UMAP). In the single cell workbench, it has a primary analysis available…
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Hi all,
I've been searching github for ways to classify documents (E.g. Word or Excel documents in a corpus) and found the paper on Q-SNE interesting and the code self-contained and easy to deploy.…