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Hi,
I would like to project the modules calculated in one dataset to a query dataset (both single-cell RNA sequencing data).
However, when I run `ProjectModules()` according to your tutorial, …
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Hi,
Thanks for creating such a great tool! And congratulations on defending your PhD!
Just a note that using my settings (described below), I continually got an error with TestSoftPowers functi…
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Hi, I was wondering if there was an easy way to remove the p < 0.1 terms from the output plot without having to filter the input dataframes? I tried commenting out the level1 and removing the colors s…
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Hello,
I recently ran into some problems with TCGAbiolinks.
I used the TCGAbiolinks package in april 2018 to download the bladder cancer set and ran some analysis. Unfortunately I don't know which v…
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Dear nicheNetR Team,
Following my nichnetr analysis, I have generated a list of target genes and I am interested in assigning pathways to these genes. Could you kindly advise if there is a function…
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The idea is to implement all possible functions in C to directly operate on lists. To begin with, maybe:
- [ ] rowmins
- [ ] rowmaxs
- [ ] rowmeans
- [ ] rowsums
- [ ] rowvars
- [ ] rowsds
- ...
Impl…
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**Describe the bug**
When using the plot for KMEs and the lolliplot plot for differential module expression, I get an incompatibility error. This happen in general with any data, and with the lates…
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Hi,
Thanks a lot for this very useful package.
I am facing a little issue when using PlotDMEsLollipop. The output of the plot seems odd
```
group1 % filter(group == "group1") %>% rownames
group2 …
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Hello,
I've noticed an interesting result when trying to use multiple cores to process MSExperiment objects using findChromPeaks. Regardless of the number of cores I register (using register(bpstart(…