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## Context
I need to create MSAs for a very large set of protein sequences: about 25 million.
I was planning to use the ColabFold workflow. I figured that this would be achievable given the nonlin…
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Hello,
I am trying to run the example code to predict protein monomer 7u7w_A and I get the following error
`./SE3nv-20240131.sif -m rf2aa.run_inference --config-name protein
/usr/lib/python3.10/…
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(RFAA) kinshuk@kinshuk-lab:/media/kinshuk/My Book/RoseTTAFold-All-Atom$ python -m rf2aa.run_inference --config-name covalent
/home/kinshuk/anaconda3/envs/RFAA/lib/python3.10/site-packages/hydra/_inte…
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(RFAA1) [2200012187@hr-6-6-login RoseTTAFold-All-Atom]$ python -m rf2aa.run_inference --config-name protein
/gpfs/share/home/2200012187/mambaforge/envs/RFAA1/lib/python3.10/site-packages/hydra/_inter…
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I am currently using 1.5.2 localcolabfold. After executing colabfold_search, I found that all the a3m file names are numerical.
0.a3m
1.a3m
2.a3m
...
x.a3m
Inside of the individual a3m file…
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We received the following message when running colabfold_batch on a single small test sequence. We get this same result on two different compute clusters. Does this mean our IPs are banned?
Command: …
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Hello,
I have a fasta file containing thousands of peptide sequences. I wanted to predict their 3D structures using LocalColabFold 1.5.5 installed in an HPC cluster and I have access to GPU clus…
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## Expected Behavior
With `bash setup-and-start-local.sh` the script should install all needed databases.
## Current Behavior
However I'm getting `open ~/databases/pdb70_a3m.ffdata: no such fil…
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Hello, I wonder what is the correct format of a3m input for complex.
I have succeeded in using an a3m file as an input for monomer prediction,
both in the local version of ColabFold and AF2_batch …
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Hi,
I am recently trying tfold on an internal sequence but failed.
I did some analysis and the issue is with the MSA step. The generated a3m file contains illegal characters. In my case it is 0x…