-
...as in [ABrowse](https://ihh.github.io/abrowse/build/index.html)
-
This library is extraordinarily useful. Would you be willing to make it installable by conda as well as pip? My lab is working on an ancestral sequence reconstruction [pipeline](https://topiary-asr.re…
-
Dear Gubbins Creators,
Thanks again for a great tool! Sorry to open up so many questions. This is a multiple tools question, so please let me know if anything is out of gubbins scope.
It is my…
-
### Current Behavior
It sometimes happens that nt and the corresponding aa mutation are not on the same branch
### Expected behavior
Nucleotide and the corresponding amino acid mutations (if non-…
-
Hello,
Do you consider adding binary alignement / models ?
Thanks,
Adrien
-
Hello,
Thank you for making amazing software. It is very flexible and easy to work with. I am including a citiation for your work in my paper. My work is primarily with Ancestral sequence reconstru…
-
Hi,
I am actually trying to run CloneFinder on a machine with Ubuntu(x64) and 32 Gb of ram. I installed every dependencies described in the Readme and the ones that are not in it, ete2 and scikit-l…
-
Hi @vmaffei !
I am experiencing the following problem when formatting the tree in a FEDORA system with a fully working installation of qiime and picrust 1.1.1. when I run:
`format_tree_and_trait…
-
Hi,
It's not clear to me how SNPgenie polarizes the mutations (to compute dN/dS and piN/piS).
Does it assume the ancestral states are the ones supplied in the reference fasta? If so, how would S…
-
We should run a Bayes Factor test for strict vs uncorrelated lognormal clocks. I don't think that we have enough data to support a more complex model, but worth checking out.