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Now that we have most of the metadata from the first sampling round, we would like to harmonise the available metadata according to the standards we are producing.
**AI**:
- [x] Gather all the soil s…
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### As a
Computational scientist doing meta-analysis
### I want to
be able to aggregate output files of multiple assays/studies
### So that
i can depict the workflow of aggregating met…
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Hi!
First off, thank you for this analysis tool!
I am analyzing some Perturb-Seq data and have followed the vignette. I ran Mixscale_Scatterplot and interestingly the perturbation score seems p…
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Hello,
I am having trouble subsetting a seurat object based on raw counts (expression of transgenes). I simply want to subset based on non-transformed data. I tried this by setting the assay to RNA…
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Trying to use BPCells to help with smoother analysis of Visium HD data but keep getting errors.
localdir visium_data
> # Convert to BPCells format
> expr_matrix expr_matrix_int
> write_ma…
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```sh
R
```
```
R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and…
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[Asset 392](https://github.com/NCATSTranslator/Tests/blob/main/test_assets/Asset_392.json) says the expected output name is `DNMT inhibitor`. However, the output ID `CHEMBL:4034633` is not a proper CU…
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Dear Eva,
I used your the PLSDA_batch function to correct a batch in the filtered count matrix of my microbiome experiment. As the following step would be to perform a compositional differential ab…
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Hi LRLoop Team,
I followed the tutorial of [LRLoop analysis starting from Seurat objects] to learn cell-cell interaction.
I use your pre-calculated default networks and two celltypes each have two …