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Most of the example aws.conf file for AWSBatch does not actually provide a working example of a s3 ARN, they all seems to expect the user to specify
https://cromwell.readthedocs.io/en/stable/tutor…
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This is fairly self explanatory. We need to extend the base scheduler to implement an AWSBatch, and it should look very similar to [SLURM](https://github.com/Quansight-Labs/dask-jobqueue/blob/master/d…
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**Environment:**
- AWS ParallelCluster 2.7.0
- OS: alinux2
- Scheduler: awsbatch
- Master instance type: m5.large
- Compute instance type: p3.2xlarge
**Bug description and how to reproduc…
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- Exomiser
- PubmedScore
- Phenogenon
- SimReg
- Bevimed
- SKAT
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**Environment:**
- AWS ParallelCluster / CfnCluster version: aws-parallelcluster-2.3.1
- OS: alinux
- Scheduler: awsbatch
- Master instance type: t2.nano
- Compute instance type: determined …
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Hi
I was directed to this repo from the Jul 2019 paper - [Scalable Workflows and Reproducible Data Analysis for Genomics](https://www.ncbi.nlm.nih.gov/pubmed/31278683)
The NextFlow section of t…
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Hi @mribeirodantas
Thanks a lot for the GH repo.
Two questions from https://github.com/mribeirodantas/NextflowSnippets/blob/main/snippets/save_configs.md
1. How/Where to find a list of all…
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Address the concern regarding:
> I see that you changed this back, which may be fine. I realized that I needed to change the location of the aws cli in nextflow settings, which I had neglected to …
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Hello. Regarding this line and the similar logic in the functions around it:
https://github.com/nextflow-io/nextflow/blob/b099d430aa06b350ff63b6f3ae291dd72f49c779/plugins/nf-amazon/src/main/nextflo…
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Hi,
I'm running MOP2 on awsbatch with a relatively minimalistic input setup for testing purposes. I have matching wildtype and invitro DRS data (1 rep each) and i defined a reference for only one g…