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I know someone put a similar error before, but my case is a little bit different:
Since our cluster doesn't have docker, I have to use another container-based software Singularity, theoretically it…
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This is what I did:
-Downloaded and installed Docker for Windows
-Downloaded and installed Git Bash (it took me a while to figure out that I needed this as I had never used Git it was not obvious…
adgon updated
2 years ago
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Hi LiHeng,
I use miniasm and run into segmentation fault. I reproduced the error. Both times it only used 52% of the total 239G memory before it fail. The ovlp_corn.paf.gz is 511GB and reads.fa is …
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Do others think this is a good idea? Should we do away with the shell script builds entirely?
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I'm currently trying to run `hisat_genotype` in a `docker` container due to #66
Below is my `Dockerfile`
```
FROM biocontainers/biocontainers:vdebian-buster-backports_cv1
USER root
ENV DE…
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I am facing the error 'struct.error: unpack requires a buffer of 16 bytes' when running Eggnog-mapper (v2.1.7) with Hmmer 3.1b2.
Follow the command that is being used:
emapper.py -m hmmer --ge…
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Hi
I know somebody down here had the same problem.
I'm trying to use optotype in docker:
`docker run -v /local/pVACtools/:/data/ -t fred2/optitype --input SRR2672972_1.fastq SRR2672972_2.fastq …
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Hi all!
I am trying to run ipdSummary to try and get a look at the ipdRatio at positions across my reference genome. However I am having an issue getting my test file to run. Can someone please hel…
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Task outputs often become inputs to other tasks, such as when TES/Funnel is being used by a workflow engine. When containers write output files, they are usually owned as root, which creates a tricky …
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Hi biodocker team,
I am building a fastq to vcf pipeline using bwa, gatk and picard tools. I implemented your code for docker image for bwa, gatk and picard. For bwa I used
From biocontainers/bioc…