DaehwanKimLab hisat-genotype issues

DaehwanKimLab / hisat-genotype

GNU General Public License v3.0

23 stars 15 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

How can we increase the number of alleles that the most number of reads are mapped?

#84 jayminz opened 1 month ago
0
Hisatgenotype is taking too much of time to run on samples

#83 likhitha99 opened 1 month ago
1
forgot to build hisat2 executables?

#82 Januaryyiyue opened 2 months ago
0
Hisat-genotype run since more than 24h without writting anything or do anything...

#81 GKerdivel opened 3 months ago
5
How to add Custom VCF Data for HLA Typing with HISAT-genotype

#80 allen890205 opened 3 months ago
0
Unable to download genotype_genome_20180128.tar.gz

#79 KhooWuiSeng opened 6 months ago
2
Source of "hla.locus" File?

#78 cwarden45 closed 11 months ago
1
Error when running tutorials code with --assembly

#77 Runda-Xu opened 1 year ago
0
I have some WES data - GRCh37

#76 Pharmacogenetecist opened 1 year ago
1
How does hisatgenotype handle duplicate reads?

#75 yingchen69 opened 1 year ago
0
manual installation failed!

#74 yingchen69 opened 1 year ago
0
custom genome to assemble loci

#73 wyim-pgl opened 1 year ago
0
Please allow hisatgenotype to run with absolute paths

#72 bozbezbozzel opened 1 year ago
0
Unable to run hisatgenotype with pre-aligned data

#71 ryanalomair opened 2 years ago
1
How does HISAT-genotype predict its initial alleles in RNA Seq-data?

#70 PhilippMueller24 opened 2 years ago
0
Building a Graph Reference and Index

#69 jhylwq123 opened 2 years ago
2
Is it possible to get heterozygous or homozygous information for a certain HLA allele in hisat?

#68 jhylwq123 opened 2 years ago
0
No indicies/hla_backbone.fa file found

#67 aforsythe opened 2 years ago
2
Build Fails on MacOS 12.2.1

#66 aforsythe opened 2 years ago
0
Python 3 and issue with indexing

#65 dcolomb1 opened 2 years ago
1
No ranked alleles after EM step

#64 eugbrenner opened 2 years ago
0
Typing results failing for genes other than 1A1, 2A6, 3A4 when calling "hisatgenotype --base cyp"

#63 dcolomb1 closed 2 years ago
0
It seems that fastq file path cannot be parsed

#62 gudeqing closed 2 years ago
2
Weird running behavior

#61 bcantarel opened 2 years ago
0
update DB

#60 ghost opened 2 years ago
6
Allele counts

#59 davetang closed 2 years ago
6
Problem installation

#58 ghost closed 2 years ago
1
indefinite stalling caused by exit(1) within process

#56 gh-btsui closed 2 years ago
2
HLA typing on Nanopore or PacBio data

#55 kokyriakidis opened 3 years ago
7
parse-results: misaligned columns in output csv

#54 nikyk opened 3 years ago
0
No typing and assembly results output

#53 wshuai294 opened 3 years ago
8
Slow HISAT2 Step

#52 kcygan closed 3 years ago
1
Cannot run hisat-genotype for BAM file

#50 nikyk opened 3 years ago
6
missing file: DRB5_nuc.msf

#51 nikyk opened 3 years ago
3
Remove genome db dependency in genotyping locus function

#49 wongkarenhy-color opened 3 years ago
0
Add core_fid as an input parameter

#48 wongkarenhy-color opened 3 years ago
0
Assembly results problem

#47 wshuai294 closed 3 years ago
10
ValueError: not enough values to unpack (expected 11, got 3)

#46 salonso65 closed 3 years ago
2
Add check for samtools in the PATH of the hisatgenotype script

#45 tinyheero opened 3 years ago
0
Genotype.genome_tran for RNA-seq analysis

#44 Tijs-dot opened 3 years ago
1
Gene expression using BAM files from HISAT-genotype

#43 Tijs-dot opened 3 years ago
1
Trimming the final two fields in the HLA-alleles

#42 Tijs-dot opened 3 years ago
4
Trimming the final two fields the HLA-alleles

#41 Tijs-dot closed 3 years ago
0
Error when converting .report into csv (hisatgenotype_toolkit)

#40 Tijs-dot opened 3 years ago
3
Fail to download genotype_genome_20180128.tar.gz

#39 wshuai294 closed 3 years ago
2
multiprocessing error

#38 Tijs-dot opened 3 years ago
3
can hisat-genotype genotype on whole human genome

#37 masen1991 closed 3 years ago
1
Failed to open file Bam file

#36 npatel-ah closed 3 years ago
9
Would hisat-genotype work with Panel sequencing ?

#35 npatel-ah closed 3 years ago
2
Can I update the hla fasta and msf files from IPD-IMGT/HLA ftp?

#34 smw1414 closed 3 years ago
1