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DaehwanKimLab
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hisat-genotype
GNU General Public License v3.0
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Empty outputs w/ no warnings or errors
#33
helixscript
opened
3 years ago
1
Parsing output into a CSV file
#32
tinyheero
closed
3 years ago
2
Fix setup.sh script and add check for samtools in PATH
#31
tinyheero
closed
3 years ago
1
Calling LOH for HLA using HISAT-genotype outputs
#30
andreyto
closed
3 years ago
2
Empty extraction variable results in an IndexError
#29
nikolasthuesen
closed
3 years ago
5
HISAT-genotype model for HLA allele abundance estimates
#28
rtobes
closed
3 years ago
5
AssertionError
#27
davetang
opened
3 years ago
6
UnboundLocalError: local variable 'ins_len' referenced before assignment
#26
davetang
closed
3 years ago
1
Genotyping DRB3/4/5
#25
bingreily
opened
3 years ago
11
Wrong variable name in hisatgenotype_typing_common.py
#24
nikolasthuesen
closed
3 years ago
3
Missing argument in genotyping_locus()
#23
nikolasthuesen
closed
3 years ago
2
FileNotFoundError: [Errno 2] No such file or directory: 'genotype_genome.locus'
#22
davetang
closed
3 years ago
3
Wrong variable name in hisatgenotype_typing_common.py
#21
nikolasthuesen
closed
3 years ago
2
Separate the reference generation step from genotyping step
#20
tinyheero
closed
3 years ago
5
Interpreting the output of `conc-results`
#19
tinyheero
closed
3 years ago
3
Parameterize the output file in hisatgenotype_conc_results.py
#18
tinyheero
closed
3 years ago
0
No rule to make target 'hisat2-inspect-section'
#17
masen1991
closed
3 years ago
4
Output in TSV format?
#16
tinyheero
closed
3 years ago
7
No genotype_genome_backbone.fa file found
#15
yubau1112
closed
3 years ago
9
setup.sh version 20 May has a typo
#14
nealamo
closed
3 years ago
1
Assembly
#13
davetang
closed
3 years ago
5
Updating hisatgenotype_db
#12
davetang
closed
4 years ago
5
HISAT-genotype tutorial
#11
davetang
closed
4 years ago
7
setup.sh
#10
davetang
closed
3 years ago
3
Report the most likely alleles for a sample
#9
mbosio85
closed
4 years ago
2
Extent CYP genotyping
#8
kokyriakidis
opened
4 years ago
2
remove wrong link
#7
hsiaoyi0504
closed
4 years ago
1
Bug in installation
#6
twesigomwedavid
closed
4 years ago
6
Allow use alternative location for HISAT2_fnames
#5
hsiaoyi0504
closed
3 years ago
6
AttributeError: 'Namespace' object has no attribute 'graph_genome'
#4
hsiaoyi0504
closed
4 years ago
2
Convert the result file to table
#3
memumab
closed
4 years ago
6
Python version
#2
amomin-pact
closed
4 years ago
2
hisat-genotype batch does not process paired reads
#1
memumab
closed
4 years ago
6
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