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_From @fedarko on February 25, 2017 2:25_
We want to be able to distinguish assemblies with lots of tiny components (e.g. biofilm 2) vs. asms with a few large components (e.g. shakya old, biofilm 1).…
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I am working on metagenomes from river biofilms (average temperature of the river about 10 degrees). I have 6 samples (5 to 10) that were sampled every few days from the river when biofilms were growi…
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Ranked list of environmental packages to include:
See [discussion in NMDC Slack](https://nmdc-group.slack.com/archives/CFVH4DYGH/p1648490387254119)
- [x] Soil, including
- soil
- soil_emsl…
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I am running Kaiju classification for my Biofilm based meta-genome reads and I used Nr-euk database. However Kaiju yielded less than 25 % classification at phylum level. Is there any ways to increase …
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Hi,
I am running kraken2 on marine biofilm samples, and I haven't been able to return more than 3% of sequences classified. Here's what I have tried:
-Multiple databases, including kraken2 standar…
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Hi could you please let me know why I am getting this error? Thanks!
(mpa-portable) curangalt-osx:Biofilm_proteins curanga$ mpa-portable de.mpa.cli.CmdLineInterface -xtandem 0 -msgf 1 -spectrum_fil…
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Greetings all! We need classes for microbial lifestyles like "free-living", "biofilm-associated", "substrate-bound", and "host-associated" - these aren't exactly phenotypes (more the result of a combi…
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There are few groups in the ontology now which refer to the way food is ingested: 'scraper', ‘sucker’, ’shredder’. They are positioned in different places, and insidespecific trophic groups. It makes …
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Hi, can you provide details on where gravity is factored into the program? Can this force be altered within LAMMPs or at fixes within NuFEB?
Thank you,
Aubrie
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I'm investigating biofilms living on plastic debris. I want to find out if there is differential expression of certain KEGG Orthologs (KO) at week 0 and week 7 of my microcosm experiment (as well as b…