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We say in the text that BioPerl now includes a FALDO feature exporter - from which version onwards - and is this in the main bundle, or separate?
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Hello, My config contains the following lines:
```
GENETIC_CODE_TABLE=1
GENETIC_CODE_TABLENAME=Standard
MITO_GENETIC_CODE_TABLE=2
MITO_GENETIC_CODE_TABLENAME=Vertebrate Mitochondrial
PARENT_DI…
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---
Author Name: **Chris Fields** (@cjfields)
Original Redmine Issue: 3213, https://redmine.open-bio.org/issues/3213
Original Date: 2011-04-20
Original Assignee: Bioperl Guts
---
Indexing of BLAST …
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Good day,
I am getting output after running alitv.pl on two fasta files, and I can view the .json file online, I did, however, get the following warning:
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
You…
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---
Author Name: **Sirisha Gollapudi** (Sirisha Gollapudi)
Original Redmine Issue: 2886, https://redmine.open-bio.org/issues/2886
Original Date: 2009-07-27
Original Assignee: Bioperl Guts
---
I’m t…
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Hi,
Christ Fields suggested I post this as a feature request. Sometime around the switch to the wiki the very useful pdoc documentation available via http://doc.bioperl.org/ was lost.
Although t…
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It should be ` $qpmax; and $qpmin;` right ?
https://github.com/bioperl/bioperl-live/blob/7cc47700c5ee5aed5e6a32966b86628c28b6b127/lib/Bio/SearchIO/Writer/GbrowseGFF.pm#L267
https://github.com/bi…
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```
use strict;
use Bio::Seq;
use Bio::SeqIO;
use Bio::Restriction::Analysis;
my $fasta_file = "sample.fa";
my $inputstream = Bio::SeqIO->new(-file => $fasta_file,-format => 'Fasta');
m…
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Hi,
The bioperl recipe does not work as the .pm libraries are not getting included to the path:
```
$ perl
use Bio::AlignIO;
Can't locate Bio/AlignIO.pm in @INC (you may need to install the Bio…
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The perl-bioperl recipe is not installing a functional copy of bioperl on Linux.
```
(base) $ conda create -n bioperl -c conda-forge -c bioconda -c defaults perl-bioperl
...
The following NEW pa…