bioperl bioperl-live issues

bioperl / bioperl-live

Core BioPerl 1.x code

http://bioperl.org

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issues

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New warnings with perl 5.41.x

#394 eserte opened 1 month ago
2
Could Bio::DB::Fasta support gzipped FASTA?

#393 Tong-Chen opened 2 months ago
0
Alternative CI?

#392 cjfields closed 6 months ago
2
Bio::Tools::CodonTable is out of date (again)

#391 carandraug closed 7 months ago
2
Update CodonTable.pm with Genetic code 15

#390 igortru closed 7 months ago
1
Genetic code 15 need to be supported

#389 igortru closed 7 months ago
5
Bio::Tools::GFF add extra empty attribute problematic

#388 Juke34 opened 7 months ago
1
Bug in is_ter_codon

#387 Juke34 closed 6 months ago
3
Codontable bugs.

#386 Juke34 closed 7 months ago
1
t/Root/RootIO.t may fail because of Google returning 403

#385 eserte closed 10 months ago
4
cant run VAMPr because of Bio::DB::Fasta

#384 Hedi65 closed 11 months ago
1
Fix tiny bug

#383 Juke34 closed 1 year ago
4
fix a tiny typo

#382 yochannah closed 1 year ago
1
Fix bsml_sax.t by using lax SAX parser

#381 zmughal closed 1 year ago
3
Add minimum dependency on base.pm v2.18

#380 zmughal closed 1 year ago
2
CI: Add test jobs using Debian containers

#379 zmughal closed 1 year ago
2
CI: test with minimum, median, and latest Perl versions

#378 zmughal closed 1 year ago
0
Suggestion: create a CODEOWNERS file to connect modules with maintainers

#377 zmughal opened 1 year ago
2
Failing t/SeqIO/bsml_sax.t due to 404 for DTD URL

#376 zmughal closed 1 year ago
1
Minimum Perl version should be set to v5.8

#375 zmughal opened 1 year ago
6
Add initial GitHub Actions workflow

#374 zmughal closed 1 year ago
16
How do I grab the corresponding sequence from the mitochondrial genome?

#373 CC3729 closed 1 year ago
3
Why Bio::SeqFeature::Generic can only get Seqfeature's source item?

#372 CC3729 closed 1 year ago
3
Why Bio::SeqFeature::Generic can only get Seqfeature's source item?

#371 CC3729 closed 2 years ago
1
fix for writing large_fasta sequences

#370 epaule closed 2 years ago
3
Bio::Tools::GFF doesn't write eukaryotic multi-exon genes correctly

#369 krobison13 opened 2 years ago
7
make a CITATION.cff?

#368 hyphaltip opened 2 years ago
1
How to install Bioperl v1.7.2 in Ubuntu

#367 sekhwal opened 2 years ago
0
Create CODE_OF_CONDUCT.md

#366 cjfields closed 2 years ago
9
Add Code of Conduct for OBF

#365 cjfields closed 2 years ago
2
Taxonomy.t Tests Fails for Bio::Perl::

#364 joshuakirsch opened 2 years ago
1
Bio::DB:Taxonomy won't connect to NCBI

#363 kastevens opened 3 years ago
1
t/SeqFeature/Generic.t failures

#362 eserte opened 3 years ago
0
Update bp_seqcut

#361 MattOates closed 3 years ago
1
problem with installing Bio::DB::Fasta module

#360 shaghayeghsoudi opened 3 years ago
3
Research notice: Sustainability in Open Source Projects

#359 yochannah closed 1 year ago
1
adds research notice to the readme

#358 yochannah closed 3 years ago
6
Bio::Align::DNAStatistics to calculate Tajima-Nei Distance Fail

#357 MauriAndresMU1313 closed 3 years ago
6
Testing Bio::DB::NCBIHelper-1.7.6 failed

#356 tonyaseverson closed 3 years ago
3
Possible precedence issue with control flow operator at Bio/DB/IndexedBase.pm line 805

#355 hyphaltip opened 3 years ago
3
Bio::Procedural won't install

#354 threepistons closed 3 years ago
4
Unable to run ping_ensembl.pl

#353 thevinayrao opened 3 years ago
2
Bio/SeqIO.pm

#352 SAMANDOLL closed 4 years ago
0
Where to find moved packages?

#351 Stikus closed 4 years ago
5
db.h dependency

#350 lskatz opened 4 years ago
2
Sequin table format

#349 lskatz opened 4 years ago
4
Adjust Swiss-Prot FT A..B lines

#348 smoe closed 3 years ago
1
Remove XML::DOM::XPath dependency

#347 cjfields closed 3 years ago
10
Updating Mauricio's email

#346 arareko closed 4 years ago
0
Each line of the file must be less than 65,536 characters

#345 Juke34 opened 4 years ago
9