JervenBolleman FALDO-paper issues

JervenBolleman / FALDO-paper

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Updated description section in implementations; updated my affiliation and BioInterchange URI

#31 KimJBaran closed 9 years ago
0
Figure 8 and 9 use faldo:ExactlyKnownPosition instead of ExactPosition

#30 JervenBolleman opened 9 years ago
0
More on INSDC compound locations

#29 peterjc closed 9 years ago
0
Alternative formats/content negotation

#28 JervenBolleman closed 9 years ago
1
Relation of Vario to Faldo

#27 JervenBolleman opened 10 years ago
1
Position position

#26 JervenBolleman opened 10 years ago
5
Removed VCF from the list of input formats that BioInterchange can handle

#25 KimJBaran closed 10 years ago
2
(new) Figure 1: The classes and object properties used in FALDO

#24 peterjc closed 10 years ago
3
Switch to licence CC-BY 4.0?

#23 peterjc closed 10 years ago
3
Cite 1st and 2nd BioHackathon papers too?

#22 peterjc closed 10 years ago
2
Fixed typos and grammar / removed some vague statements

#21 KimJBaran closed 10 years ago
1
Fixed typos, wording change, added myself as contributor.

#20 KimJBaran closed 10 years ago
0
small changes to authors contributions and discussion

#19 fstrozzi closed 10 years ago
0
rbuels edits

#18 rbuels closed 10 years ago
0
inverse properties

#17 cmungall closed 10 years ago
1
Figure 1 changes

#16 cmungall closed 10 years ago
2
Make clearer that we talk about database record when using the word sequence.

#15 JervenBolleman closed 10 years ago
1
Visual diagrams to supplement the (text only) examples?

#14 peterjc closed 10 years ago
1
Details for BioPerl's FALDO exporter

#13 peterjc opened 10 years ago
2
JBrowse screenshot as new Figure?

#12 peterjc closed 10 years ago
4
Claiming to handle all biological uses cases

#11 peterjc closed 10 years ago
5
Genome Variation Format (GVF)

#10 peterjc closed 10 years ago
2
ENA vs EMBL-Bank

#9 peterjc closed 10 years ago
1
Title: should it include FALDO?

#8 JervenBolleman closed 10 years ago
2
Figure 5: property chain

#7 cmungall closed 10 years ago
1
Additions on Chado and ROI queries

#6 cmungall closed 11 years ago
1
Methylation wording change. Named mechanism that makes sequence direction relevant.

#5 KimJBaran closed 11 years ago
1
Trans-splicing example

#4 cmungall closed 10 years ago
1
Address circular genomes

#3 cmungall closed 10 years ago
3
Write paragraphs for main paper

#2 JervenBolleman opened 11 years ago
4
Split locations.tex into multiple text files one per section

#1 JervenBolleman closed 11 years ago
2