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... because we ultimately want a map of the molecular evidence of an occurrence of a virus, not a map of the experiments that were performed
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#### Description
Unit-level record URIs can be a attribute of datasets and would enable filtering by this information. _abcd:RecordURI_ can be mapped to [schema:url](https://schema.org/url) of an [bi…
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Getting the error below after running `getmetadata.py -a Biosample_accessions.txt -t biosample -o outdir -e myemail@company.co.uk`
**retrieving biosample accession metadata from NCBI
/bin/sh: 1: e…
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:cool:
### :pushpin: Explain the Request
We recently added functionality (via PR #506 and PR3 over in Mercury repo: https://github.com/theiagen/mercury/pull/3) in Mercury to automatically genera…
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Possibly available from https://gold.jgi.doe.gov/downloads, specifically the [Public Studies/Biosamples/SPs/APs/Organisms Excel](https://gold.jgi.doe.gov/download?mode=site_excel) link, which download…
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Paper text:
> All raw sequencing data in FASTQ format are available in the NCBI Sequence Read Archive (SRA) BioProject database under accession number PRJNA956585 as BioSamples SAMN34224450–SAMN3422…
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# Acceptance Criteria
Improve the mapping / functionality of the Ingest Archiving to BioSamples.
The wranglers should involved in developing this ticket so that we can describe as much as possible how…
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Hi, I have a list of SRR and CFSAN numbers. Is the code going to work for those?
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This recommendation was raised in the [review of the Poseidon paper](https://elifesciences.org/reviewed-preprints/98317v1/reviews#tab-content#tab-content).
> The BioSamples database (https://www.eb…
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The `env_package` slot in the schema should have the range of an Enum, with the list of permissible values constructed using the value of `` in https://www.ncbi.nlm.nih.gov/biosample/docs/packages/?fo…