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Does TElocal work with long read bulk RNA-seq? If so, has anyone done this, and, are there any reccomrecommendations on how to run it?
Thank you,
FR
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I have a relatively large bulk RNA seq dataset (~ 1300 samples, from ~70 experiments) that I'd like to correct for significant batch effects. Is it valid/possible to apply BERMUDA to my dataset? Inste…
mdanb updated
3 years ago
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Hello,
First I would like to thank you for developping BayesPrism v2.2. It allows me to use large atlases as reference for deconvolution.
However, when I tried to use it, I got an error for some…
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我已经跑完流程,得到了raw_matrix文件夹,我现在想自己进行从头的质控以及后续一系分析。但是我是进行了很多尝试使用 scanpy 读取总是会报错?不知道是否支持?
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[Input data](https://galaxy.hyphy.org/u/stephenshank/h/drosophila-transcriptomics-training---input-data), [QC and mapping workflow](https://training.galaxyproject.org/training-material/topics/transcri…
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Hi!
I'm not very familar with GRN, I got some questions after reading GENIE3 vignette.
1. Is that sample number matters? What's a proper sample number?
2. Is the treat method of sample matters?…
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Dear akdess:
I have some problems about bulk RNA-seq data.
1. Is there a limitation with the sample size? how many samples does it work well at least?
2. If I have more than one cohort from public …
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Hi! Impressive work!
I was wondering whether your package would support demultiplexing bulk RNA-seq? And nanopore-based (i.e. not Illumina short) reads? Is support for other genomes (e.g. other mam…
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Is CarDEC applicable to bulk RNA seq data? I have a relatively large dataset (~1300 samples from 70 experiments) that I’d like to correct for significant batch effects
mdanb updated
3 years ago