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Dear ascat community,
I hope my message reaches you well ! First and foremost, congrats for the great and very interesting pipeline and supported analyses for cancer research ! Currently, I'm reach…
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**Background**:
Pathway diagrams are widely used in genomics to describe changes occurring in signaling pathways resulting from genomic alterations. There are [several tools](https://www.ncbi.nlm.n…
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Hi there,
I am testing QuagmiR on CGC.
However, it errors out and the error message is not very revealing.
It said (see details below): _KeyError in line 328 of /opt/quagmir/Snakefile_
I sus…
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**Background**:
Pathway diagrams are widely used in genomics to describe changes occurring in signaling pathways resulting from genomic alterations. There are [several tools](https://www.ncbi.nlm.n…
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Compare transcriptomes of B-ALL cells from our RNA-seq to the transcriptomes from the paper:
`Single-cell functional genomics reveals determinants of sensitivity and resistance to natural killer cells…
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### Need
The number of SVs uploaded to Scout for WGS cases in balsamic is much higher than is common, and could really benefit from being reduced. As an example here are the some values from the mo…
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### Submitter Name
Grace Pendlebury
### Submitter Affiliation
Shariant / Australian Genomics
### Submitter Github Handle
_No response_
### Additional Submitter Details
Shariant is…
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https://doi.org/10.5220/0006636401400145
> In the era of precision medicine and cancer genomics, data are being generated so quickly that it is difficult to fully appreciate the extent of what is d…
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Although the ideal non-COVID examples would be those suspected of COVID but do not test positive for it like with other types of pneumonia. But in any case here are some other datasets:
Lung CT Seg…
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**User story**
SVS files are common in the TCGA project: https://www.cancer.gov/about-nci/organization/ccg/research/structural-genomics/tcga
For example: https://portal.gdc.cancer.gov/files/85f18a…