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griffithlab
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civic-meeting
Repo for advertising and organizing CIViC unconference/meeting activities
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Join the GA4GH Clinical Genomics Laboratory Community in partnership with ClinGen!
#75
YasmeenKurdi
opened
2 weeks ago
0
Cytogenomics data standards and tools
#74
ahwagner
opened
2 weeks ago
6
Therapeutic tiering for targeted therapies when no genomic alteration is specifically mentioned in the professional guidelines
#73
wesleygoar
opened
3 weeks ago
1
Multi-variant genomic events - evaluation of reporting practices
#72
wesleygoar
opened
3 weeks ago
2
Discordance calculation and minimum information standards for sharing cancer variant interpretations.
#71
GracePendlebury
opened
3 weeks ago
5
CIViC features discussion: How can CIViC be improved to encourage more of the variant curation process to happen on the CIViC website
#70
susannasiebert
opened
3 weeks ago
4
Increasing the Transparency of Variant Effect Prediction
#69
RachelKarchin
opened
4 months ago
4
update repo for 2024 unconference
#68
korikuzma
closed
5 months ago
2
How to use high throughput functional assay data for variant interpretation
#67
ahwagner
opened
1 year ago
5
Return of interpretation results
#66
ahwagner
opened
1 year ago
6
Expanding the CIViC Data Model to non-Gene based Variants
#65
arpaddanos
opened
1 year ago
7
Categorical Variation
#64
ahwagner
closed
1 year ago
0
Applying the ClinGen/CGC/VICC oncogenicity guidelines within a clinical workflow
#63
wesleygoar
opened
1 year ago
2
Clinical interpretation of non coding variants
#62
arpaddanos
opened
1 year ago
1
CIVIC Molecular Profiles Integration with OpenCRAVAT
#61
RachelKarchin
opened
1 year ago
12
Fix curation/hackathon label case in templates
#60
korikuzma
closed
1 year ago
0
Add hackathon + curation project proposal forms
#59
korikuzma
closed
1 year ago
0
Improve completeness of level A evidence items (Room 309)
#58
cgrisdale
closed
1 year ago
1
Parameterizing a Digital Twin Model
#57
arpaddanos
closed
1 year ago
8
Draft SOP for the new molecular profile feature (Room 305)
#56
susannasiebert
closed
1 year ago
1
Assist data clients in updating their codebase to use the V2 API (Room 305)
#55
susannasiebert
closed
1 year ago
1
Identifying current variants that are complex molecular profiles (Room 305)
#54
susannasiebert
closed
1 year ago
3
Gene fusion curation (Room 308)
#53
ahwagner
closed
1 year ago
12
Curating the non-coding genome
#52
mccoymd
closed
1 year ago
2
Biophysical modeling for interpreting functional impacts
#51
mccoymd
closed
1 year ago
4
Discuss current and novel visual representations of structural rearrangements and copy number data (Room 307)
#50
baileyglen
closed
1 year ago
2
Improve WHO book representation in ontologies (Room 307)
#49
baileyglen
closed
1 year ago
3
Develop Template Components for CCGA in MediaWiki (Room 307)
#48
baileyglen
closed
1 year ago
1
Curation: Building a Fact-checking companion dataset for CIViC (Room 309)
#47
creisle
closed
1 year ago
1
CNV / SV knowledge discussion
#46
malachig
closed
2 years ago
1
interaction network diffusion of oncogenicity metric value of variants to find signalling neighborhoods
#45
dexterpratt
closed
2 years ago
1
CIViC networks available in NDEx
#44
agary-ucsd
closed
2 years ago
0
Explore web applications for community contribution to knowledge networks
#43
NuriaQueralt
closed
2 years ago
2
Examine ways to incentivize the curation community
#42
susannasiebert
closed
2 years ago
1
Strategies for Variant Normalization & Representation
#41
susannasiebert
closed
2 years ago
3
Variant Interpretation Knowledgebase Interoperability
#40
susannasiebert
closed
5 years ago
0
Best practices in annotating CNVs and fusions alongside variants in knowledgebases
#39
bpitel12
closed
2 years ago
2
ClinGen VCI <-> Evidence Registry <-> CIViC Integration (VHL collaboration)
#38
malachig
closed
2 years ago
1
Methods for assessing and comparing variant databases and AI technologies
#37
stryxvaria
closed
2 years ago
4
Modeling Variant Interpretations in SEPIO
#36
malachig
closed
2 years ago
2
Improve CIViC WikiData integration
#35
malachig
closed
2 years ago
8
Hands-on CIViC curation workshop
#34
kkrysiak
closed
2 years ago
1
Integrate CIViC with genome browsers (igv.js, JBrowse, ...)
#33
jrobinso
closed
2 years ago
4
Integration of CRAVAT and CIViC
#32
malachig
closed
2 years ago
3
Write a VEP plugin that annotates a VCF with CIViC data
#31
susannasiebert
closed
2 years ago
0
Exporting CIViC data
#30
susannasiebert
closed
2 years ago
0
Definition of new region types for expanded cancer variant representations
#29
arpaddanos
closed
2 years ago
0
SOP and evidence codes for somatic variant oncogenicity/clinical actionability
#28
arpaddanos
closed
2 years ago
7
Using the CIViCpy module to query data
#27
ahwagner
closed
2 years ago
1
contact wikidata about participating in hackathon
#26
jmcmichael
closed
6 years ago
0
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