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Is pychopper compatible with with the new SQK-PCB114.24 kit. Will the '-k PCS111' work ?
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Hi there,
On the [ONT community website](https://community.nanoporetech.com/docs/prepare/library_prep_protocols/ligation-sequencing-v14-direct-cdna-sequencing/v/dcs_9187_v114_revh_19apr2023/downstr…
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Hello,
Can the same pipeline be used for cDNA sequencing as well? I have the fastq reads and the reference genome and transcriptome fasta sequences.
Thank you.
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Two attributes (cDNA Length and cDNA Offset) that were accidentally included in this initial version of the template. These are optional attributes and can be ignored by users currently, but we should…
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Hi,
First of all, we want to thank you for this wonderful application. It has streamlined our variant annotation workflow tremendously.
We submitted the HG19 chr16-11349332-CC-TT variant to Ope…
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### Suggestion Description
This is more of a question at this point. CDNA3 MI300x supports up to 8 x partitions per card via SR-IOV. Can `k8s-device-plugin`
- detect the partitions?
- allocate the…
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Hi,
Can I use treefam scan with cDNA sequences like those coming from transcriptome assemblies (e.g. Trinity)?
Thanks,
A.
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Is the positive ddg value in the dataset a good mutation or a bad mutation?
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We would like to use Dorado polyA estimation for our custom cDNA method called Nano3Pseq, which uses NBD114 kit. The adapter sequence is similar to the VNP oligo used for cDNA synthesis.
Thanks,
…
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ftp://ftp.ensembl.org/pub/release-75/fasta/mus_musculus/cdna/