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Hi there,
I'm just wondering if you had tables of cell type calls for each species corresponding to the counts matrices you have on GEO somewhere.
Awesome work! thanks!
Matthew
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Is there any way to enable showing cell types instead of/or in conjunction with their names?
example:
![image](https://github.com/msinger/dmg_cpu_b_map/assets/5828819/eb7cc311-b34e-4003-aad4-326…
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I may be wrong but, in my data, when sender cell is set to only one cell type (in your example, you used 6 cell types), the figure "LFC in sender" cannot be plotted correctly, it shows "NA" genes with…
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Hi all,
Thanks for providing this resource. Is there a way to match CellViT's cell type labels, obtained from the images, with the gene expression vectors in the AnnData object?
Merel
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### Keywords
flake8-copyright, CPY, Jupyter Notebook, .ipynb
### Steps to reproduce
Using the following `pyproject.toml`:
```toml
[tool.ruff]
extend-include = ["*.ipynb"]
[tool.ruff.lin…
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Hi Fabio,
I try to query the API with cell types that contain an underscore (_), and it returns a 400 error.
`
> let api = require('@fabilab/atlasapprox')
> let params = {organism:"a_thaliana",…
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Hi, thanks for an exemplary data availability!
I would like to use your dataset for an analysis, and have found the molecule coordinates allright, but I was wondering where I can find the cell type…
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**Why is this needed**:
In all other timeseries and sparkline visualizations, thresholds can be added to change the color of the series based on given values. Currently, with the new "sparkline" …
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There is an issue in the DMN Editor. Once user tries to set properties of the header cell, he/she is not able to write down more than one character. Once the one character is typed, the focus is lost.…
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Please check that the term does not already exist by using the ontology search tool OLS:
https://www.ebi.ac.uk/ols4/ontologies/cl
**Preferred term label**
Epithelial stem cell of gut
**Synon…