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Hi, I must be overlooking something obvious.
How do I save calculated contours as a label image?
Keeping with your Coin example:
```
# Run model
with torch.no_grad():
x = cd.to_tensor(img,…
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I am using ICDAR 2019 cTDaR (Table Detection), DiT-base Cascade R-CNN to train my custom dataset.
I tried to inference the given model:
https://layoutlm.blob.core.windows.net/dit/dit-fts/icdar19mo…
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https://github.com/FZJ-INM1-BDA/celldetection/blob/main/demos/Cell%20Detection%20with%20Contour%20Proposal%20Networks.ipynb
In the above tutorial, when I replace `cpn='CpnU22',` in conf = cd.Config…
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Hi @ericup!
I would like to compliment first of all your repo, nicely done !
It's been a week now that I found out about your repo and been trying to load my cell library images. I've been using…
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Hello!
I'm doing a systematic assessment to determine the ROI dtx parameters for my data set. My question is in regards to "threshold_scaling."
Is "threshold_scaling" referring to thresholding the…
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## ❓ Questions and Help
### When batchsize = 1, the training process is normal. Once it is set to a number greater than 1, an error is reported: CUDA error: an illegal memory access was encrypted.
…
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H-DAB Ki67 labeled tissue,
celldetection of negative blue nuclei works best, with Hematoxylin OD Nucleus Detection.
Drawback is lack of recognition of DAB positive cells.
Recognition of DAB po…
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Hi,
I'm trying to find a way to analyse the spheroids I have cultured and I feel like there must be a way to make QuPath tell these larger shapes with multiple cells inside apart from the scaffold …
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Hi Pete, dear all,
I merged annotations of the same class into an Area annotation with class.
Afterwards I let QuPath run cell detection.
But it does not count the cells inside the ROI anymore…
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There is a syntax error in file cellDetection/compute_overlaps.m on [line 23](https://github.com/cortex-lab/Suite2P/blob/2d2b3e4663b55bc4ec611fee67f399d6802a7638/cellDetection/compute_overlaps.m#L23).