MouseLand suite2p issues

MouseLand / suite2p

cell detection in calcium imaging recordings

http://www.suite2p.org

GNU General Public License v3.0

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issues

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BUG: UnboundLocalError: local variable 'meanImg_chan2' referenced before assignment

#1133 GiangTranHU opened 1 day ago
0
BUG: Large OME.TIFF files not registering

#1131 nhanford199 opened 1 week ago
0
BUG: Unable to visualize selected cells for rastermap plots

#1130 C57B6J opened 1 week ago
0
Merging to newest version

#1129 tbabola closed 2 weeks ago
0
Issues with installation of suite2p

#1128 GiangTranHU opened 2 weeks ago
4
BUG: Value error after manual labelling extraction

#1127 Nique19351 opened 3 weeks ago
0
BUG: Functional channel not being assigned to channel 2

#1126 jordanfarrell opened 4 weeks ago
0
BUG: ROI coordinates shifted in y-axis with respect to manually-drawn Ellipse

#1125 yzerlaut opened 1 month ago
0
BUG: 1P masks not aligning, issue of average image?

#1124 jackbrougher opened 1 month ago
0
ValueError: operands could not be broadcast together with shapes

#1123 C57B6J closed 1 week ago
1
Bug fix for python 3.11 and over

#1122 calebshibu opened 1 month ago
1
functional segmentation of GCaMP8m

#1120 ftomaska opened 2 months ago
0
initial implementation of isxd reading

#1119 ludovicbellier closed 2 months ago
0
Imaging with Fluo-4

#1118 marytunun opened 2 months ago
0
FEATURE: ROI registration and interpretation of

#1116 eunjoy21 opened 2 months ago
0
FEATURE: ROI registration

#1115 eunjoy21 opened 2 months ago
0
BUG: Partial analysis on subset of data does not work

#1113 knowblesse opened 3 months ago
0
force integer value for `np.arange` when indexing h5 file with 4D and 5D data

#1112 knowblesse opened 3 months ago
1
BUG: Can not handle an h5 file with 5D data structure

#1111 knowblesse opened 3 months ago
3
DOC: some readthedocs.io links to API are broken

#1110 neurochatter opened 3 months ago
0
BUG: sbx_to_binary computes nframes incorrectly with multiple channels if longer than batch_size frames

#1109 ethanbb opened 3 months ago
1
BUG: model_path() takes from 1 to 2 positional arguments but 3 were given

#1108 lea-danics closed 3 months ago
3
qt.qpa.plugin error after installation (no root privileges)

#1107 batuhanerkat opened 4 months ago
0
Update zalign.py

#1106 liadJB closed 4 months ago
0
Error when run ops file

#1105 KKroba closed 3 months ago
4
Don't show ROIS in main screen

#1104 KKroba closed 3 months ago
3
BUG: error when running suite2p

#1103 Monodia97 closed 3 months ago
2
BUG: error in anatomical detection using cellpose 3

#1101 nguyemi5 closed 4 months ago
1
support for dcimg

#1100 nguyemi5 closed 4 months ago
1
Deconvolution for RGECO neuronal signal

#1099 ZiTao956 opened 4 months ago
0
FEATURE: operating extraction on cropped region

#1098 jingxuanf0214 closed 2 months ago
2
Bug: Merge ROIs duplicates

#1097 sdaste opened 4 months ago
0
Installing using pip on source results in OSError:...libScanImageTiffReaderAPI.so: cannot open shared object file: No such file or directory

#1096 paulgarias opened 4 months ago
0
Tiff ValueError: the total number of frames should be at least 50. RAW to TIFF conversion in Fiji

#1095 rsymzk closed 4 months ago
2
BUG: Unable to extract dendritic ROIs

#1094 seethakris opened 4 months ago
0
TypeError: model_path() in rungui.py on newly installed suite2p

#1093 IreneP19 closed 4 months ago
5
RECOMMENDATION: Processing multi plane images with different types of structures

#1092 GergelyTuri opened 4 months ago
0
BUG: GUI, error ROI detection cannot convert float infinity to integer

#1090 klab-buffalo opened 4 months ago
4
BUG: not able to save data.bin file after registration through colab - but same thing works through GUI

#1089 julia-napoli opened 4 months ago
7
BUG: Access to the DATA.bin file is denied

#1088 mkzhou00 closed 4 months ago
0
BUG: Error with registration/ROI extraction

#1087 kyesther00 opened 5 months ago
0
support roi extraction of 2-channel data in GUI

#1086 itsb closed 2 months ago
1
Documentation and refactoring of suite2p/detection/sparsedetect.py

#1085 nspiller opened 5 months ago
0
BUG: manual ROI extraction error

#1084 EunJungHwang closed 2 months ago
2
BUG: creating combined view gives rise to error when ignore_flyback>0

#1082 just-meng opened 5 months ago
0
BUG: frames to binary conversion is enforced when ignore_flyback>0 was previously set

#1081 just-meng opened 5 months ago
1
BUG: Error finding H5 files (correction included)

#1080 scottcanoe opened 5 months ago
0
Two bugs related to zcorr processing

#1079 liadJB opened 5 months ago
0
BUG: module 'suite2p' has no attribute 'default_ops'

#1078 ronfinn closed 4 months ago
2
BUG: Changing functional detect settings produces an error

#1077 kyesther00 closed 5 months ago
0