MouseLand suite2p issues

MouseLand / suite2p

cell detection in calcium imaging recordings

http://www.suite2p.org

GNU General Public License v3.0

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issues

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2024 M3 Mac Install Issue

#1153 smbaca opened 3 days ago
0
Modifying .npy outputs to reload into GUI

#1152 katereinhart opened 1 week ago
0
Fix File Path Handling for Usernames with Spaces

#1151 felixsmli opened 1 month ago
0
BUG: <Please write a comprehensive title after the 'BUG: ' prefix>

#1150 limserenahansol opened 1 month ago
0
New s2p version cannot handle lists of h5 files

#1149 oterocoronel opened 1 month ago
0
BUG: Bruker input using Ch2 only.

#1148 LABell2842 opened 1 month ago
0
BUG: <Please write a comprehensive title after the 'BUG: ' prefix>

#1147 mmzinn12 opened 1 month ago
0
Dummy PR for review

#1146 Zachary-Ip opened 2 months ago
0
ROI detection wrapper modifies the input images and consequently, can't detect ROIs

#1145 harinisuri opened 2 months ago
0
Registration metrics do not exclude bad frames

#1144 samupicard opened 2 months ago
1
BUG: Merge ROI not working

#1143 ycYiwei opened 2 months ago
0
Menu bar in GUI is invisible

#1142 Mengya-W opened 3 months ago
1
Error in GUI - Space in Users name

#1141 AMlsct closed 3 months ago
1
BUG: Cannot load suite2p image into suite2p UI. Divide by 0 error

#1140 arielleleon opened 3 months ago
0
BUG: <Please write a comprehensive title after the 'BUG: ' prefix> Significantly higher fluorescence values in Suite2p in images collected thru Scanimage and saved in imageJ

#1139 niraulasuraj9 opened 3 months ago
0
BUG: Suite2P gui not saving update to NWB file

#1138 JohnStout opened 3 months ago
0
BUG: Can't manually label ROIs on the mean image of a second channel, only over the mean image of the first channel

#1135 ShayMeAs opened 4 months ago
0
BUG: UnboundLocalError: local variable 'meanImg_chan2' referenced before assignment

#1133 GiangTranHU opened 4 months ago
0
BUG: Large OME.TIFF files not registering

#1131 nhanford199 opened 5 months ago
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BUG: Unable to visualize selected cells for rastermap plots

#1130 C57B6J opened 5 months ago
0
Merging to newest version

#1129 tbabola closed 5 months ago
0
Issues with installation of suite2p

#1128 GiangTranHU opened 5 months ago
8
BUG: Value error after manual labelling extraction

#1127 Nique19351 opened 5 months ago
1
BUG: Functional channel not being assigned to channel 2

#1126 jordanfarrell opened 5 months ago
0
BUG: ROI coordinates shifted in y-axis with respect to manually-drawn Ellipse

#1125 yzerlaut opened 5 months ago
1
BUG: 1P masks not aligning, issue of average image?

#1124 jackbrougher opened 5 months ago
0
ValueError: operands could not be broadcast together with shapes

#1123 C57B6J closed 5 months ago
1
Bug fix for python 3.11 and over

#1122 calebshibu opened 6 months ago
1
functional segmentation of GCaMP8m

#1120 ftomaska opened 6 months ago
0
initial implementation of isxd reading

#1119 ludovicbellier closed 7 months ago
0
Imaging with Fluo-4

#1118 marytunun opened 7 months ago
0
FEATURE: ROI registration and interpretation of

#1116 eunjoy21 opened 7 months ago
1
FEATURE: ROI registration

#1115 eunjoy21 opened 7 months ago
1
BUG: Partial analysis on subset of data does not work

#1113 knowblesse opened 7 months ago
0
force integer value for `np.arange` when indexing h5 file with 4D and 5D data

#1112 knowblesse opened 7 months ago
1
BUG: Can not handle an h5 file with 5D data structure

#1111 knowblesse opened 7 months ago
3
DOC: some readthedocs.io links to API are broken

#1110 neurochatter opened 8 months ago
0
BUG: sbx_to_binary computes nframes incorrectly with multiple channels if longer than batch_size frames

#1109 ethanbb opened 8 months ago
2
BUG: model_path() takes from 1 to 2 positional arguments but 3 were given

#1108 lea-danics closed 8 months ago
3
qt.qpa.plugin error after installation (no root privileges)

#1107 batuhanerkat opened 8 months ago
0
Update zalign.py

#1106 liadJB closed 8 months ago
0
Error when run ops file

#1105 KKroba closed 8 months ago
4
Don't show ROIS in main screen

#1104 KKroba closed 8 months ago
3
BUG: error when running suite2p

#1103 Monodia97 closed 8 months ago
2
BUG: error in anatomical detection using cellpose 3

#1101 nguyemi5 closed 8 months ago
1
support for dcimg

#1100 nguyemi5 closed 8 months ago
1
Deconvolution for RGECO neuronal signal

#1099 ZiTao956 opened 9 months ago
0
FEATURE: operating extraction on cropped region

#1098 jingxuanf0214 closed 7 months ago
2
Bug: Merge ROIs duplicates

#1097 sdaste opened 9 months ago
0
Installing using pip on source results in OSError:...libScanImageTiffReaderAPI.so: cannot open shared object file: No such file or directory

#1096 paulgarias opened 9 months ago
0