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MouseLand
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suite2p
cell detection in calcium imaging recordings
http://www.suite2p.org
GNU General Public License v3.0
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Manual labeling issues
#1076
Kojot1444
opened
6 months ago
2
BUG: Overlap of ROIs calculated on all ROIs instead of kept ROIs from filtering by overlap
#1075
JRegg66
opened
6 months ago
0
Unexpected effect of sampling rate of segmentation
#1073
maxseppo
opened
6 months ago
0
Extract ROI from the second channel
#1072
Ayetheint
closed
6 months ago
1
BUG: Suite2p trouble on rendering the GUI at Ubuntu20.04
#1071
Kim-HaYeon
closed
6 months ago
1
BUG: GUI doesn't load in suite2p installed in WSL, Import Error: libEGL.so.1, no such file or directory
#1070
vickerse1
closed
4 months ago
6
Added support for Thorlabs RAW files (io.raw)
#1069
yael-prilutski
closed
6 months ago
1
ValueError: could not broadcast input array from shape (19,416,416) into shape (18,416,416)
#1068
gistempert
opened
7 months ago
9
DOC: What is the difference between Sparsery and Sourcery?
#1067
nspiller
opened
7 months ago
0
BUG: current version of Suite2p puts default ops and classifiers in Windows 10 Users folder but doesn't account for spaces in path
#1066
vickerse1
closed
4 months ago
25
Arielleleon bug pull from defined h5py
#1065
carsen-stringer
closed
7 months ago
1
BUG: can't initialize new run, unrecognized arguments error in __main__.py
#1064
vickerse1
closed
7 months ago
11
ROIs not showing
#1063
mtvrdic1
closed
7 months ago
13
Nonrigid will cause the lowest grayscale value of the image to be negative
#1062
Achuan-2
opened
7 months ago
0
BUG: chan2detect intensity_ratio function using meanImg_chan2 instead of meanImg_chan2_corrected
#1061
mariacozan
opened
7 months ago
0
Docs badge leads to cellpose docs
#1060
darikoneil
closed
7 months ago
0
Fluorescence signal is all 0
#1058
scshen19
closed
8 months ago
0
Qt6 CheckState Fix for Windows Users
#1057
landoskape
closed
7 months ago
2
Docs Classifier Update
#1056
landoskape
closed
8 months ago
2
BUG: why no ROIs are labeled after data processing
#1054
yduxx
closed
7 months ago
5
DOC: Please provide description of types of contributions you are (not) looking for
#1053
yarikoptic
closed
8 months ago
1
Saving motion corrected registered video
#1052
Ayetheint
closed
8 months ago
5
BUG: ROIs manually curated in combined view not saved in individual plane folders
#1051
mariacozan
closed
8 months ago
2
Newio
#1050
carsen-stringer
closed
8 months ago
1
Multi channel ome.tif files as input - data shuffled between channels
#1049
bdudok
opened
8 months ago
0
BUG: Having trouble reading the nwb files
#1048
R7anZ7
closed
7 months ago
3
Fix use of dataclasses for python 3.11
#1047
simon-ball
opened
8 months ago
7
Mac M2 chip, issue with scanimage-tiff-reader
#1046
andrestrocyte
opened
8 months ago
2
FEATURE: Extract signal from manual segmentation via ImageJ
#1045
just-meng
closed
6 months ago
1
Question about the number of frames after reading by suite2p.io.BinaryFile
#1044
PikaPei
closed
6 months ago
2
BUG: <Please write a comprehensive title after the 'BUG: ' prefix>
#1043
kmahe1
closed
6 months ago
4
checking h5py key to open binaries before data_path
#1042
arielleleon
closed
7 months ago
9
BUG: data_path key is checked even if h5py is supplied
#1041
arielleleon
closed
6 months ago
2
BUG: Gives me the following error when I try to run a tiff file on suite2p
#1040
kyesther00
closed
7 months ago
3
BUG: When try to run the pipeline on .h5 dataset, the error ocurrs
#1039
R7anZ7
closed
8 months ago
0
ROI information in suite2p numpy array?
#1038
Eddymorphling
closed
8 months ago
1
Reading .sbx files with GUI
#1037
kirstyngrams
opened
9 months ago
1
FEATURE: generate ROI.zip compatible with imageJ from segmented cells
#1036
brian1000
opened
10 months ago
5
FEATURE: Independent control of 'maxregshift' for X and Y axis during registration
#1035
FishQian
opened
10 months ago
0
FEATURE: More .tiff file options for mesoscopic data with ScanImage Metadata
#1034
FlynnOConnell
opened
10 months ago
1
FEATURE: y-axis scalebar for z-scores displayed in Rastermap and PC sorted data visualization window in GUI
#1033
vickerse1
opened
10 months ago
0
FEATURE: scalebar for z-scored data displayed in Rastermap and PC rasterized displays
#1032
vickerse1
opened
10 months ago
0
ROI masks generated by Cellpose powered anatomical_only mode in Suite2p are very different from those generated by native Cellpose
#1031
dnsdnsdnsdns
opened
10 months ago
1
Docs classifier update
#1030
landoskape
closed
8 months ago
2
Fixing bug in checking whether the ROIs_on checkbox is checked
#1029
landoskape
closed
7 months ago
1
BUG: Toggling ROIs off and on with spacebar causes a QGraphicsScene issue
#1028
landoskape
closed
7 months ago
13
Building wheel for opencv-python-headless (pyproject.toml) did not run successfully
#1027
dnsdnsdnsdns
closed
4 months ago
2
BUG: An error occurred while trying to save to mat by using GUI
#1026
chunyueli
closed
7 months ago
3
FEATURE: Calculate dead columns from unidirectional sbx files or manually crop sbx files
#1025
tkmymgc
closed
10 months ago
0
BUG: KeyError: "'ndx-ellipse-eye-tracking' not a namespace"
#1024
rcpeene
closed
6 months ago
3
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