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MouseLand
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suite2p
cell detection in calcium imaging recordings
http://www.suite2p.org
GNU General Public License v3.0
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Install and Test Issue (Mac Os), Suite2p installed but not able to import/load .tif files
#1023
gmbcrazy
closed
6 months ago
2
BUG: Merged ROIs not saving in stat.npy in GUI
#1021
yrleftbrain
opened
11 months ago
1
Exporting ROI as an image in GUI
#1020
Eddymorphling
opened
11 months ago
0
How to opt out of non-rigid registration?
#1019
shclair
closed
11 months ago
1
FEATURE: Draw non-ellipse manual ROIs in GUI
#1017
yrleftbrain
opened
11 months ago
1
Installation issue: "Could not load the Qt platform"
#1016
doleduke
closed
8 months ago
2
Fix numerous typos using codespell
#1015
yarikoptic
closed
8 months ago
4
adding pyqt6 and switching to qtpy
#1014
carsen-stringer
closed
11 months ago
2
Extract total number of calcium spikes from entire 2D+T datasets
#1013
Eddymorphling
opened
11 months ago
0
BUG: Module not found: sbxreader
#1012
rcpeene
closed
8 months ago
1
BUG: Registration module - 'suite2p.io' has no attribute 'BinaryRWFile'
#1011
ronfinn
closed
11 months ago
2
Error trying to open GUI after fresh install on Windows 10
#1010
outlace
closed
8 months ago
3
Update installation instructions for Macs, min version of rastermap
#1009
rly
closed
11 months ago
4
Addresses doc issues and package issues
#1008
chriski777
closed
11 months ago
0
<Please write a comprehensive title.>
#1007
IbrahimLab-23
closed
11 months ago
5
codespell: add config and action to codespell the code to avoid known typos
#1006
yarikoptic
closed
11 months ago
4
BUG: pyqt fails to load on fresh installation when no conda pyqt isn't installed
#1005
oraby
closed
8 months ago
2
Re-add connected to GUI options
#1004
hmacomber
closed
11 months ago
1
Is there an option to select which version of GCaMP I'm imaging?
#1003
harshidapancholi
closed
1 year ago
0
How to load stim trace in suite2p?
#1002
Yang-xu328
closed
8 months ago
2
ROI detection/registration area is smaller than the full field-of-view
#1000
sarahapark
opened
1 year ago
0
Error with rastermap.mapping
#999
harshidapancholi
closed
1 year ago
5
BUG: oasis batches cells, not frames
#997
RandallJEllis
opened
1 year ago
0
Python deconvolution implementation seems very different from OASIS and old Matlab implementation
#996
RandallJEllis
closed
3 months ago
2
deconvL0 decay time issue
#993
MM-DRIVE
opened
1 year ago
0
DOC: Save_Path0 is not actually a list
#991
NathanielH-snek
closed
1 year ago
0
DOC: How does one retrieve ncells and image distortion
#990
loganPasternak67854
closed
11 months ago
2
io issue when using on a server. Cannot find h5 files
#989
milesOIST
closed
8 months ago
10
DOC: GUI integration with SLURM
#988
gmaggi
opened
1 year ago
0
h5py and paramiko packages not installed with 'python -m pip install suite2p[gui]'
#987
Atika-Syeda
closed
1 year ago
1
Details regarding processing multiple tiff files
#986
PrasannaKumaran
closed
1 year ago
7
FEATURE: How to apply the same mask on different resolution data
#985
annahayoon
opened
1 year ago
0
FEATURE: Use processed suite2p output to run registration only
#984
horsto
opened
1 year ago
2
Error with Compute Z-Position function
#983
kdc14641
opened
1 year ago
0
Help optimizing bouton detection
#982
brendavasquez
opened
1 year ago
0
add scanimage-tiff-reader as a dependency again
#981
carsen-stringer
closed
11 months ago
0
Discrepancy between ops['meanImg'] and stat['xpix']/stat['ypix']
#980
RandallJEllis
opened
1 year ago
0
BUG: <Error in create_neuropil_basis>
#979
Gery111
closed
1 year ago
3
Unable to import suite2p in the correct conda environment despite successful installation
#978
fifth-island
closed
11 months ago
3
ROIs with Values of 0 Over All Frames
#977
jmdelahanty
opened
1 year ago
2
Implement rotation of manual ROIs
#976
amorsi1
closed
8 months ago
1
FEATURE: Multi channel data processing for h5 files
#975
zoltanhock
opened
1 year ago
0
tifffile Errors Logged with tifffile.read_uic_tag in ome.tif
#974
jmdelahanty
closed
1 year ago
2
BUG: Running suite2p interrupted (no file/directory found)
#973
marytunun
closed
1 year ago
5
BUG: ops['nblocks'] ops['xblock'] ops['yblock'] not saved in suite2p 0.13.0?
#972
jlarsch
opened
1 year ago
0
Upgrade fails due to `Cannot uninstall 'llvmlite'` error
#971
zelunw
closed
1 year ago
1
FEATURE: Return X Y matrix of ROI mask to visualize morphology across days
#970
neurovanlin
closed
1 year ago
3
:bug: Improving the compatibility of saving TIF files
#969
Achuan-2
closed
11 months ago
9
Update README.md
#968
carsen-stringer
closed
1 year ago
0
Dev
#967
carsen-stringer
closed
1 year ago
1
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