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在我运行
im_cibersort
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Thanks for developing this software!
I have successfully downloaded the test data, but i get an error when i run the pipeline from your tutorial on the sample data sets. It said:
`fit
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I used "cell_bar_plot" function of IOBR recently, this is my code:
> cibersort res >>>=== Palette option for random: 1: palette1, 2: palette2, 3: palette3
Error in palettes(category = "random", co…
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### Brief description of the problem
Hi, I've been using this package well for my studies. However, I found out that some of the annotations in the [`cell_type`] column of the embedded `immunede…
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Hello,
I tried to use your conda environment and I have this error, did you change anything in the Conda environment?
Fetching package metadata ...........
Solving package specifications:
Pa…
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Following error when I try to run the PBMC-scRNA notebook:
```
/clustergrammer_fun/categories.py in dict_cat(net, define_cat_colors)
131 for inst_full_name in inst_dict:
132 …
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Hi,
I'd like to use your `deconvo_tme` method to use CIBERSORT to deconvolute some mouse RNA-seq data. I have an LM_22 like signature matrix for mice and I was wondering what would be the best way …
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Section: # Predict Cell Types using CIBERSORT Signatures
Error: AttributeError: 'Series' object has no attribute 'get_values'
moqri updated
3 years ago
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Dear all,
I get above error as it was described in issue https://github.com/omnideconv/immunedeconv/issues/124.
I was mentioned there that the CIBERSORT version, which is the same as mine, had …
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Hi
I am confused. Why your LM22 file is so bigger than the file downloaded from CIBERSORT?
512 LM22.txt
6400 LM22fromGEPIA.txt
Thanks!