-
Hi,
I'm having issue with checkGTF when running on gtf file dowloaded on Genbank database :
Here the GTF file :
```
#gtf-version 2.2
#!genome-build ASM3821986v1
#!genome-build-accession NCBI…
-
In C:
```c
#ifdef __cplusplus
extern "C" {
#endif
__attribute__((visibility("default"))) std::array foo() {
std::array bar;
....
return bar;
}
#ifdef __cplusplus
}
#endif…
gyuro updated
1 month ago
-
I've used pandas df.to_csv() to write out a custom codon table
[codon_table.csv](https://github.com/user-attachments/files/16568039/codon_table.csv)
reading this table gives an error when reading …
-
I have several sequences of codons that I want to remove, not necessarily a pattern within the whole sequence. The codon sequences are all 3 long (9 NT). I am having trouble finding a solution. I ofte…
-
```
$ mkdir build ; cd build ; cmake -G Ninja .. ; ninja
...
[262/376] Building CXX object CMakeFiles/codon_test.dir/test/cir/instr.cpp.o
/usr/home/yonas/git/make-cd/files/codon/build/codon_rules.…
yonas updated
18 hours ago
-
Here are three analyses, quite simple, each is a 3 partition analysis on a small COI alignment. The only difference between the three is the option for how to treat the branch lengths among partitions…
-
## Describe the issue
VEP fails with the error message "Can't call method "each_seq" on an undefined value at \ensembl-vep/Bio/EnsEMBL/Variation/TranscriptHaplotype.pm line 451, line 75759."
Imme…
-
Github: https://github.com/exaloop/codon
And of course MIT news: https://news.mit.edu/2023/codon-python-based-compiler-achieve-orders-magnitude-speedups-0314
-
**What is this request referring to?**
Stop codon variant
**What is the name you would like SO to give the term?**
stop_codon_variant
**What is the definition that you would like for this term…
-
**What is this request referring to?**
Start codon variant
**What is the name you would like SO to give the term?**
start_codon_variant
**What is the definition that you would like for this te…