STOmics SAW issues - Githubissues

STOmics / SAW

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version `GCC_4.8.0' not found

#166 SuqinYang opened 5 days ago
14
How to get bin1 coordinates of bin50 region?

#165 tenlives opened 1 week ago
1
MAJOR BUG: reanalyze diffExp may discard significantly differentially expressed genes in the csv output

#164 melop opened 1 week ago
9
I can not get the TRACKLINE in my .stereo file generating from SAW COUNT

#163 laomaizi-beagle opened 3 weeks ago
14
Exception: SAW-A40002: Unable to get track transformed tif from

#162 wzhang42 opened 3 weeks ago
9
saw 8.1.0 reanalyze multiomics error

#161 KrileSaiko opened 3 weeks ago
2
Filtering out small cells in cellcut

#160 renli1024 closed 1 month ago
8
FFPE stereo-seq data analysis

#159 mycecilia opened 1 month ago
1
how to update ipr file

#158 lvmt opened 1 month ago
7
The GPU ID is not available: 0

#157 KrileSaiko opened 1 month ago
4
Where is Metrics_default_V8.0.0_FFPE.xlsx

#156 KrileSaiko opened 1 month ago
4
Custom genome generation

#155 maximelepetit closed 1 month ago
2
SAW-A40004: IPR "ssDNA/QCInfo" attribute "QCPassFlag" is less than 1.

#154 Druidzha closed 1 month ago
11
SAW-A40004: IPR "ssDNA/QCInfo" attribute "QCPassFlag" is less than 1.

#153 Druidzha closed 1 month ago
2
SAW_7.1.sif report error

#152 lvmt closed 1 month ago
0
SAW ipr2img failed

#151 Clouate closed 1 month ago
1
number of thread Error at step cell_cluster when stereoPipeline_v7.1_manual_part2.sh

#150 wzhang42 opened 1 month ago
2
'utf-8' codec can't encode characters in position 16154-16159: surrogates not allowed

#149 Donbbit opened 1 month ago
7
Error: [2024-9-20 20:5:42] SAW-A12102: open file- falied

#148 liangyuli12138 opened 2 months ago
1
SAW-A40004: The sequencing data is empty.

#147 joweihsieh opened 2 months ago
3
Is there a way to add cellbin's cell type annotation results into GEF, and plot the spatial annotation with cell shape in stereopy?

#146 ruiliphy opened 2 months ago
1
Issue with checkGTF on Genbank gtf

#145 maximelepetit closed 1 month ago
1
registration failed cannot convert float NaN to integer

#144 XiaolongYang-HZAU closed 2 months ago
0
UMAP cellbin report informations

#143 maximelepetit opened 3 months ago
8
How to process GEM file

#142 sli231 opened 3 months ago
6
How to process data without mask files

#141 youwh1996 opened 3 months ago
3
Files cannot be read when mapping.

#140 regenerativescience closed 3 months ago
6
About StereoMap & Image Studio V3.0

#139 sarahshuang closed 2 months ago
4
Increase Buf Size

#138 minhtien-trinh opened 3 months ago
7
Images of nuclei acid staining Missing

#137 Tailion9 closed 3 months ago
2
CID whitelist

#136 tenlives opened 3 months ago
3
Step03 failure by SAW-A40001

#135 regenerativescience closed 3 months ago
3
cannot build SAW via singularity

#134 sarahshuang closed 2 months ago
8
Step07.report TypeError: float() argument must be a string or a number, not 'Vividict'

#133 Changzhanhe opened 3 months ago
3
DAPI staining that match with cellbin cell coordinates

#132 YiqianGu opened 4 months ago
3
Stomics raw.gef file empty?

#131 kf-cuanschutz closed 4 months ago
6
EXITING because of FATAL PARAMETER ERROR:

#130 GLking123 closed 4 months ago
2
Problems with data format conversion

#129 ultraypy closed 4 months ago
2
image registration failed

#128 qiuyixmm opened 4 months ago
4
Error detected in HDF5 (1.12.3) thread 0

#127 joweihsieh closed 4 months ago
5
metaclass conflict when running SAW_7.1.sif

#126 YiqianGu closed 4 months ago
2
Number of MMP reads exceeds the threshold

#125 reyvnth closed 3 months ago
2
Can't pull the image because dockerhub has been close

#124 feeisnotfree closed 4 months ago
6
Bad magic number in .pyc file

#123 aadimator closed 4 months ago
1
pandas is incompatible with numpy < 1.20.3

#122 YiqianGu closed 4 months ago
3
fastq-SE segmentation error

#121 YiqianGu closed 5 months ago
2
Multiomics analysis dotplot_RNA

#120 WeijiaSu opened 5 months ago
2
errors in cell cluster for proteins

#119 WeijiaSu closed 5 months ago
0
What does "cell bin" mean?

#118 Zhouchlei opened 5 months ago
2
register issue

#117 Wooseok1114 opened 5 months ago
1