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**For the Colon Cancer test DSP dataset from CPTR, there is the following error:**
When subsetting for a specific class like "normal" or "cancer" in the GeoMxSet object like so:
```
subset.obje…
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_Note: do not take action on this yet, it is pending feedback from Sharon Plon's expert panel_
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Relabel the following terms to Lynch syndrome 1 - 8.
MONDO_0018630 'hereditary nonpolyposi…
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### Your current environment
First of all: fantastic project :-) Thank you for everything.
I would like to fix this bug. But I just do not have the capacity now. So I just thought I would try to m…
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Hello!
There seems to be an issue with preparing of certain data sets for analysis. It's weird, since if works for some of the projects, but it doesn't work for others. One of the projects causing …
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Dear Kassambara,
Thank you for developing package survminer.
I have problem for adjusting pvalue coordinate : especially, I am not able to move in x-axis.
Here is reproducible example.
Bes…
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Thanks for sharing your code. I am able to run the code with the patches downloaded from google drive.
Can you point me to the function in your code which produces the patches from the original Co…
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**Describe the bug**
Unable to upload images for the report when calling `ipr_report`.
**To Reproduce**
Steps to reproduce the behavior:
1. Run command `ipr_report`
2. with input:
```
{
…
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In GitLab by @dieter.beule on Feb 11, 2020, 13:39
This is really an feature request: We claim to do FAIR data management. Currently if I search for a sample ID I will only get results for projects th…
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Skip will need to do this.
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Hi,
Thank you for developing the amazing software bin2cell.
I am currently using bin2cell with my Visium HD 2µm data. While I successfully ran the pipeline on two samples, I encountered an error wit…