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I am trying to simulate a set of HiFi reads 10x coverage of Pea Aphid genome. I am getting this in the error script:
rm: cannot remove `Sim-it-master/Output/PeaA/Long_reads_to_merge_PeaA_NW_021758…
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I tried to simulate 1000 Inverted Duplication (IDUP) events with PacBio reads using hg38 genome, but the reads do not seem to contain any such events. I aligned the reads with pbmm2, and can't see any…
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Hello.
I am using this simulation tool and found that the tool need simulation Hap1 and Hap2. But it is not in the configure file. If I only input the reference, it will have the following error:
St…
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Dear all,
We already have constructed a graph from six genomes (five newly assemblied genomes plus one backone reference). I want to focus on the non-backone references added in the graph. Can I us…
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Orphanet lists quite a few [ring chromosome syndromes](https://www.orpha.net/en/disease/classification/sibling/158293?orphaCode=363203&plus=1&search=Autosomal-trisomy&entry=98130&mode=name). In a revi…
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### Feature request
https://github.com/OpenAdaptAI/OpenAdapt/pull/610 introduced the `VisualReplayStrategy` which works by segmenting the active window for every mouse event.
This is wasteful be…
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I use vg (v1.39.0) construct on a vcf file (VCFv4.2) and hg19 but got the following warning: `"warning:[vg::Constructor] Unsupported variant allele ; Skipping variant(s)"`.
After some simple debug…
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Hi,
I've had generally good success assembling chloroplasts with `get_organelle_from_assembly.py`!
One of my samples fails though, with three repeats of the message `Consensus made: (187292-|189…
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### Enhancement Proposal
## `class AlertRules`
`AlertRules` is used in both prometheus_scrape and remote_write. A variation also [exists in loki_push_api](https://github.com/canonical/loki-k8s-ope…
sed-i updated
2 years ago
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Edit: despite the title this link list now contains all kinds of reference material for benchmarking/normal-filtering SV (including CNV) calls on a population level as well on single sample (mostly ce…