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Hey everyone!
I don't think there is much hope that any of us with skin in the game are going to agree to implement the same model, no matter what it is. Instead, I'd like to propose a way of commu…
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This issue is to discuss the minimal features before our first "public" release (i.e., release where would be comfortable sharing with a broad audience).
- [x] Able to load custom embeddings (https…
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I ran `cryodrgn backproject_voxel` on a cryo-ET dataset, and this was the output plot:
Command:
```
$ cryodrgn backproject_voxel particles.star --tilt -d 2.93 --poses pose.pkl --ctf ctf.pkl --dat…
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**THIS IS FROM THE ORIGINAL ANALYSIS. FOR UPDATED SCENARIOS/REVISIONS TO SCRIPTS, SEE COMMENT BELOW**
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Scenarios
- Historical (up to 2020):
- baseline screening with cytology age age 35 up t…
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hi Biochemfan,
I am sorry for posting this here, I'm not sure how else to contact you.
I am wondering if it's possible to include a dose weighting scheme for subtomo averaging in RELION 5? I se…
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Dear developers, we would like to setup PyTom on our lab workstations (CentOS 7) for cryo-ET processing. I followed the Github installation instructions by 1) creating a conda environment; 2) building…
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Thanks for merging my previous tiny contribution ("permissive=True")! :)
I want to add writing functions (`napari_get_writer`, `napari_write_image`) to the plugin, as well as a dock widget with vol…
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Hello,
I'm running `ts_etomo_patches` with the following command:
```
WarpTools ts_etomo_patches \
--settings warp_tiltseries.settings \
--angpix 4.76 \
--patch_size 500 \
--initial_axis 3.0…
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### dask-image example datasets
We need some good example data for tutorials with dask-image.
This issue is a place for discussion and suggestions. If you have links, add them here!
Ideally th…
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Just saw this tweet announcing a human brain MRI at 100µm isotropic resolution. This could be a very cool dataset to use as a napari demo. I suggest we use this issue to keep track of datasets that we…