SBC-Utrecht PyTom issues

SBC-Utrecht / PyTom

PyTom software for cryo-tomogram processing

GNU General Public License v2.0

33 stars 8 forks source link

issues

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Support numpy >2

#67 sroet opened 1 month ago
0
use better way to find numpy include directory

#66 sroet closed 1 month ago
6
anaconda channel requires a license

#65 jjv5 closed 1 month ago
10
wrong shift determined by subPixelMaxSpline function in gpuStructures.py

#64 alncat opened 1 month ago
0
performance enhancement for Glocalsampling

#63 alncat opened 1 month ago
0
template matching result filtering

#62 alncat opened 1 month ago
10
3D template matching in VPP_tomo

#61 yanhezhao opened 2 months ago
2
Error when running INFR

#60 AmarckRess opened 3 months ago
8
Update README.md

#59 McHaillet closed 6 months ago
0
add to readme to use pytom-template-matching-gpu repo for latest updates

#58 McHaillet opened 7 months ago
0
template matching module should become a dependency of pytom

#57 McHaillet opened 7 months ago
0
segmentation violation error at template matching step

#10 madelinerollins opened 11 months ago
8
Bump to version 1.1

#9 McHaillet closed 1 year ago
0
possible refactors

#11 McHaillet opened 1 year ago
0
use cupy.cuda functions instead of avail_gpu in pytom/gui/guiFunctions.py

#55 sroet opened 1 year ago
0
remove function update_env_vars from pytom/convert/mdoc2meta.py

#54 sroet opened 1 year ago
0
Missing Files During PyTom Installation

#8 ChenchenXu0401 opened 1 year ago
2
We should ignore more autogenerated files

#53 sroet opened 1 year ago
0
Possible Dead code

#56 sroet opened 1 year ago
0
Possible code duplications

#52 sroet opened 1 year ago
1
Make sure failing E2E bin scripts that error also fail tests

#51 sroet opened 1 year ago
0
bin scripts should call python instead of pytom - requires GPU environment fix

#50 McHaillet opened 1 year ago
1
mirror test template matching should be same in GUI and fullpipeline e2e-test

#49 McHaillet opened 1 year ago
0
GUI should work without queue system

#48 sroet opened 1 year ago
0
gpu template matching should queue subvolumes on single gpu

#47 McHaillet opened 1 year ago
1
switch to logging instead of printing

#46 sroet opened 1 year ago
0
remove license printing

#45 McHaillet opened 1 year ago
0
e2e tests need to be reviewed

#43 McHaillet opened 1 year ago
6
c++ library import needs to be updated everywhere in pytom

#44 McHaillet opened 1 year ago
0
INFR reconstruction not working + needs test

#42 McHaillet opened 1 year ago
0
suggested update for pytom agnostic libraries without gpu environment variable

#41 McHaillet opened 1 year ago
0
maximum run time for gpu template matching hard coded

#40 McHaillet opened 1 year ago
0
gui batch mode wont work if there is no available queueing system

#39 McHaillet opened 1 year ago
0
Particle list filtering is slooooow

#38 McHaillet opened 1 year ago
0
subtomogram recon GUI: tomo origin of particle list can only have restricted names ('tomogram_###.mrc')

#37 McHaillet opened 1 year ago
0
PyTom installation on CentOS 7

#7 sunchang1990 opened 1 year ago
13
ctf correction jobs on gpu not working

#36 McHaillet opened 1 year ago
0
markers in fiducial alignment are impossible to see for colorblind

#35 McHaillet opened 1 year ago
0
Submitting multiple jobs at the same time: error with gpuStructures.py

#6 jmdobbs closed 1 year ago
2
neighbour_density.py --center-class option should not compare subtomo files

#34 McHaillet opened 1 year ago
0
Localization.py error

#5 jmdobbs closed 1 year ago
3
Evaluation of queuing system job submission: systems other than slurm

#33 McHaillet opened 2 years ago
0
GLocal alignment should round angular increment less

#32 McHaillet opened 2 years ago
0
particle picker subtomo deselection bug

#31 McHaillet opened 2 years ago
2
PyTom GUI

#4 neumann-emmanuelle opened 2 years ago
3
error in PyTom installation

#3 wanghaoaccount closed 2 years ago
2
PyTomGUI processes remain lingering in the background after being closed

#30 McHaillet opened 2 years ago
1
PRIORITY: mrc files write from pytom_volume cannot be read by pytom.agnostic or chimera

#29 McHaillet opened 2 years ago
0
subtomogram reconstruction batch submission is not properly distributed over the number of nodes

#28 McHaillet opened 2 years ago
0
agnostic.io.read() does not correctly convert to pytom_volume

#27 McHaillet opened 2 years ago
0