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Hi, Chris,
what effect does length_cutoff have on the number of daligner jobs (job_ directories), the runtime of daligner, or the size of the L1 las files?
Similarly, what effect does the -s param…
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Hi, Chris,
How about this idea:
Run falcon like this:
fc_run.py cfg >&fc_run.out
grep for these lines:
[INFO]Num still unsatisfied: 23
To get the total number of daligner jobs, count …
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Hi!
When i run nanocorrect-overlap.make i get this error:
make -f nanocorrect-overlap.make INPUT=~/MinION/sspace_butyricum/all_reads_buty.fasta NAME=cor
nanocorrect-preprocess.pl /home/mattia/MinION…
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I have come almost to the end with the ecoli demo in hinge but not quite. I do not understand what could be the Problem and would appreciate some help. I have copied the command and the Output below -…
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Hi, Chris,
Would it be possible to return to the older naming of jobs so that I can see at a glance in qstat whether a job is a daligner job, an LAsort/merge job, a pread daligner job, etc?
I would …
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Hello,
can you present us how we correct long reads using daccord?
i must just run` ./src/daccord reads.las reads.dam` ?
and how generete reads.las and reads.dam ?
thanks
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For a highly repetitive genome i try to assemble using falcon, however the 0-rawreads has taken too much disk which is more than 15T now and still increases! May be too much repetitive mapping in stor…
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Hi,
Does HINGE support Multiple CPU cores, if yes then how many?
Thank you in advance.
Michal
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Dear developer,
I want to make sure some parameters that module 'draft-path' uses.
hinge draft-path $PWD $db hsy50x.G2.graphml
1. I use the name of daligner database here. Is it correct?
2. sh…