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HingeAssembler
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HINGE
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
http://genome.cshlp.org/content/27/5/747.full.pdf+html?sid=39918b0d-7a7d-4a12-b720-9238834902fd
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new release?
#162
0xaf1f
opened
3 years ago
0
KeyError: 844 in: get_draft_path.py
#161
jsimba-99
opened
3 years ago
0
TypeError: must be str, not bytes in parse_read.py script
#160
jsimba-99
opened
3 years ago
2
FileNotFoundError: [Errno 2] No such file or directory /C.odor_temp_.G2.graphml'
#159
jsimba-99
opened
3 years ago
2
Add architecture ppc64le to travis build
#158
ddeka2910
opened
3 years ago
0
./hinge: line 10: Reads_filter: command not found
#157
sarah872
opened
4 years ago
0
hinge on a large plant genome
#156
dcopetti
opened
5 years ago
1
Update about the project
#155
alimayy
closed
5 years ago
2
Upgrade to spdlog v1.3.1
#154
mr-c
closed
5 years ago
0
Graphml via Networkx compatibility question
#153
markb729
closed
5 years ago
1
error message with hinge - no alignments
#152
gabster
opened
5 years ago
2
cannot open ./reads.fasta for 'r'
#151
gabster
opened
5 years ago
11
What is the significance of the parameter "quality_threshold = 0.23" in nominal.ini?
#150
SchwarzEM
opened
6 years ago
0
Not reading del_telomeres in .ini
#149
jwasmuth
closed
6 years ago
2
How do I deal with genome assemblies that are 2x the correct size?
#148
SchwarzEM
closed
6 years ago
10
Test assembly of E. coli fails at or before "hinge draft-path ..." step
#147
SchwarzEM
closed
6 years ago
6
why does utils/setup.sh try to put thirdparty/racon/bin and thirdparty/racon/tools/minimap into $PATH?
#146
SchwarzEM
closed
6 years ago
1
How can I edit ./utils/build.sh so that it 'sees' hdf5.h while running?
#145
SchwarzEM
opened
6 years ago
5
ini settings recomandation for plant genome
#144
mictadlo
opened
6 years ago
4
DASqv
#143
mictadlo
closed
6 years ago
3
hinge draft always outputs blank line and runs for a long time
#142
nottwy
opened
6 years ago
3
Cannot compile HINGE; why?
#141
SchwarzEM
closed
6 years ago
5
DBdust with HINGE
#140
mictadlo
opened
6 years ago
3
Is HINGE PYPY compatible?
#139
mictadlo
opened
6 years ago
1
Spdlog 0.14.0
#138
0xaf1f
closed
6 years ago
2
The 'postprocessing' step is too slow.
#137
nottwy
closed
6 years ago
11
HINGE process getting killed with large datasets due to single large las file (?)
#136
alimayy
opened
6 years ago
2
Step: filter problem: (null): .qual-track does not exist for this db.
#135
nottwy
opened
6 years ago
1
montonic versions
#134
0xaf1f
closed
6 years ago
1
Add/nixpkg
#133
f--t
closed
6 years ago
1
'DiGraph' object has no attribute 'edge'
#132
asdcid
opened
6 years ago
11
Can this tool assemble a large genome?
#131
okokookk
opened
6 years ago
1
Is it necessary to merge all .las file?
#130
nottwy
closed
6 years ago
8
The parameters of Module 'draft-path'
#129
nottwy
opened
6 years ago
25
add Boost_INCLUDE_DIR
#128
jameslz
closed
6 years ago
1
improve memory footprint, improve consensus quality
#127
fxia22
closed
6 years ago
0
Filter multiple alignment in a single read
#126
BHZ-BER
closed
6 years ago
2
merge from master
#125
fxia22
closed
6 years ago
0
error at draft assembly stage
#124
madhubioinfo
closed
6 years ago
9
error running clip on pacbio reads
#123
madhubioinfo
closed
6 years ago
1
HINGE graph output
#122
alimayy
opened
6 years ago
3
`hinge draft` (draft_assembly): --mlas, memory use, and system CPU time
#121
spock
closed
6 years ago
13
chmod +x pruning_and_clipping_nanopore.py
#120
spock
closed
7 years ago
1
Question: `clip` vc `clip-nanopore`?
#119
spock
opened
7 years ago
2
improve memory footprint
#118
fxia22
closed
7 years ago
0
DAMASKER and DASCRUBBER integration
#117
mictadlo
closed
7 years ago
1
Layout 0 active hinges
#116
ebioman
closed
7 years ago
5
Question regarding clipping
#115
ebioman
closed
7 years ago
3
doesn't install
#114
raw937
closed
6 years ago
7
new release
#113
0xaf1f
closed
7 years ago
2
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