HingeAssembler HINGE issues

HingeAssembler / HINGE

Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"

http://genome.cshlp.org/content/27/5/747.full.pdf+html?sid=39918b0d-7a7d-4a12-b720-9238834902fd

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issues

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new release?

#162 0xaf1f opened 3 years ago
0
KeyError: 844 in: get_draft_path.py

#161 jsimba-99 opened 3 years ago
0
TypeError: must be str, not bytes in parse_read.py script

#160 jsimba-99 opened 3 years ago
2
FileNotFoundError: [Errno 2] No such file or directory /C.odor_temp_.G2.graphml'

#159 jsimba-99 opened 3 years ago
2
Add architecture ppc64le to travis build

#158 ddeka2910 opened 4 years ago
0
./hinge: line 10: Reads_filter: command not found

#157 sarah872 opened 5 years ago
0
hinge on a large plant genome

#156 dcopetti opened 5 years ago
1
Update about the project

#155 alimayy closed 5 years ago
2
Upgrade to spdlog v1.3.1

#154 mr-c closed 5 years ago
0
Graphml via Networkx compatibility question

#153 markb729 closed 6 years ago
1
error message with hinge - no alignments

#152 gabster opened 6 years ago
2
cannot open ./reads.fasta for 'r'

#151 gabster opened 6 years ago
11
What is the significance of the parameter "quality_threshold = 0.23" in nominal.ini?

#150 SchwarzEM opened 6 years ago
0
Not reading del_telomeres in .ini

#149 jwasmuth closed 6 years ago
2
How do I deal with genome assemblies that are 2x the correct size?

#148 SchwarzEM closed 6 years ago
10
Test assembly of E. coli fails at or before "hinge draft-path ..." step

#147 SchwarzEM closed 6 years ago
6
why does utils/setup.sh try to put thirdparty/racon/bin and thirdparty/racon/tools/minimap into $PATH?

#146 SchwarzEM closed 6 years ago
1
How can I edit ./utils/build.sh so that it 'sees' hdf5.h while running?

#145 SchwarzEM opened 6 years ago
5
ini settings recomandation for plant genome

#144 mictadlo opened 6 years ago
4
DASqv

#143 mictadlo closed 6 years ago
3
hinge draft always outputs blank line and runs for a long time

#142 nottwy opened 6 years ago
3
Cannot compile HINGE; why?

#141 SchwarzEM closed 6 years ago
5
DBdust with HINGE

#140 mictadlo opened 6 years ago
3
Is HINGE PYPY compatible?

#139 mictadlo opened 6 years ago
1
Spdlog 0.14.0

#138 0xaf1f closed 6 years ago
2
The 'postprocessing' step is too slow.

#137 nottwy closed 6 years ago
11
HINGE process getting killed with large datasets due to single large las file (?)

#136 alimayy opened 7 years ago
2
Step: filter problem: (null): .qual-track does not exist for this db.

#135 nottwy opened 7 years ago
1
montonic versions

#134 0xaf1f closed 7 years ago
1
Add/nixpkg

#133 f--t closed 7 years ago
1
'DiGraph' object has no attribute 'edge'

#132 asdcid opened 7 years ago
11
Can this tool assemble a large genome?

#131 okokookk opened 7 years ago
1
Is it necessary to merge all .las file?

#130 nottwy closed 7 years ago
8
The parameters of Module 'draft-path'

#129 nottwy opened 7 years ago
25
add Boost_INCLUDE_DIR

#128 jameslz closed 7 years ago
1
improve memory footprint, improve consensus quality

#127 fxia22 closed 7 years ago
0
Filter multiple alignment in a single read

#126 BHZ-BER closed 7 years ago
2
merge from master

#125 fxia22 closed 7 years ago
0
error at draft assembly stage

#124 madhubioinfo closed 7 years ago
9
error running clip on pacbio reads

#123 madhubioinfo closed 7 years ago
1
HINGE graph output

#122 alimayy opened 7 years ago
3
`hinge draft` (draft_assembly): --mlas, memory use, and system CPU time

#121 spock closed 7 years ago
13
chmod +x pruning_and_clipping_nanopore.py

#120 spock closed 7 years ago
1
Question: `clip` vc `clip-nanopore`?

#119 spock opened 7 years ago
2
improve memory footprint

#118 fxia22 closed 7 years ago
0
DAMASKER and DASCRUBBER integration

#117 mictadlo closed 7 years ago
1
Layout 0 active hinges

#116 ebioman closed 7 years ago
5
Question regarding clipping

#115 ebioman closed 7 years ago
3
doesn't install

#114 raw937 closed 7 years ago
7
new release

#113 0xaf1f closed 7 years ago
2