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HingeAssembler
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HINGE
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
http://genome.cshlp.org/content/27/5/747.full.pdf+html?sid=39918b0d-7a7d-4a12-b720-9238834902fd
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HINGE for minimap
#112
ebioman
opened
7 years ago
10
Error 'couldn't finish sparsification2522' at postprocessing step (hinge clip)
#111
agroppi
opened
7 years ago
3
HINGE stalled and producing a huge empty error/ouput file
#110
agroppi
opened
7 years ago
6
Fasta line is too long (> 9998 chars)
#109
mictadlo
closed
7 years ago
2
Dev
#108
fxia22
closed
7 years ago
0
HINGE, Oxford Nanopore, E. coli, 23X coverage, almost closed assembly
#107
alimayy
opened
7 years ago
0
update dev
#106
govinda-kamath
closed
7 years ago
0
Congratulations on the paper!
#105
alimayy
opened
7 years ago
2
HINGE with PacBio CCS reads
#104
alimayy
opened
7 years ago
5
master => dev
#103
govinda-kamath
closed
7 years ago
0
Segmentation fault when fruit.x.las empty
#102
mictadlo
closed
6 years ago
13
HINGE does produce any file content since few days
#101
mictadlo
closed
6 years ago
16
hinge.1.md: clarify that visuali{z,s}e are two forms of the same command
#100
0xaf1f
closed
7 years ago
0
hinge wrapper: use "$@" rather than $* for better propagation of arguments
#99
0xaf1f
closed
7 years ago
0
merge from dev
#98
fxia22
closed
7 years ago
0
merge to dev_fei
#97
fxia22
closed
7 years ago
0
hinge: line 8: 15600 Segmentation fault draft_assembly $*
#96
mictadlo
closed
7 years ago
7
minor change
#95
fxia22
closed
7 years ago
0
syntax error near unexpected token `('
#94
mictadlo
closed
7 years ago
9
Examples for working directory and identifier-of-run
#93
mictadlo
closed
7 years ago
1
Multiple CPU cores
#92
mictadlo
opened
7 years ago
3
RSII as input
#91
mictadlo
closed
7 years ago
2
Could not find the following static Boost libraries: boost_graph
#90
mictadlo
opened
7 years ago
5
Bioconda
#89
mictadlo
opened
7 years ago
3
Issue with the dev branch
#88
alimayy
closed
7 years ago
4
Added correct head to hinge paths
#87
govinda-kamath
closed
7 years ago
0
segmentation error draft
#86
alimayy
closed
7 years ago
8
merge
#85
fxia22
closed
8 years ago
0
merge master to dev
#84
fxia22
closed
8 years ago
0
fixed 2-mer flipping
#83
govinda-kamath
closed
8 years ago
0
Inverted 2-mer bases
#82
alimayy
closed
8 years ago
11
Dev
#81
fxia22
closed
8 years ago
0
merge to dev
#80
fxia22
closed
8 years ago
0
Python KeyError in get_consensus_gfa.py
#79
emilhaegglund
closed
8 years ago
4
Reorganize executables to be subcommands of a single program
#78
0xaf1f
closed
8 years ago
3
Question: can I reuse the FALCON alignments in HINGE?
#77
StefanoLonardi
closed
7 years ago
18
debug
#76
fxia22
closed
8 years ago
0
get_consensus_gfa.py error
#75
ghost
closed
7 years ago
5
Update dev
#74
govinda-kamath
closed
8 years ago
0
Dev
#73
fxia22
closed
8 years ago
0
draft_assembly aborted
#72
alimayy
closed
8 years ago
3
Key and Assertion errors in get_draft_path_norevcomp.py
#71
alimayy
closed
7 years ago
14
Dev fei
#70
fxia22
closed
8 years ago
0
Detailed explanation of parameters in nominal.ini
#69
ghost
closed
8 years ago
2
Getting small contigs with long polyA and polyT stretches
#68
ghost
closed
8 years ago
18
merge master to dev
#67
govinda-kamath
closed
8 years ago
0
After filter 0 active hinges
#66
alimayy
closed
8 years ago
1
Out of range error in draft_assembly step
#65
ghost
closed
8 years ago
10
Segmentation fault at consensus
#64
alimayy
closed
8 years ago
10
Question: Which graph did you print for the biorxiv preprint
#63
ghost
closed
8 years ago
2
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