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Hello,
I tried to pull the dvc file. I made my own aws configuration by my own aws access key id and secret id. Also I've set the S3 policy to access to the s3:ListBucket but still get the following…
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Greetings,
I am trying to download and inspect the data before training my own model; however, when using `dvc pull`, my pull request is denied. I am using my own AWS credentials because I couldn't…
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Hi, I would just like to find out if there are any alternative options for the visualization of the deepBGC output other than antiSMASH?
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Hello,
Thank you for taking the time to develop this tool, it does exactly what I need it to do for my odd gene clusters. However, the only issue is that it takes more than 20 minutes per fasta fi…
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@prihoda Hi! I may find a bug that:
The output file (*.bgc.tsv) does not have "protein_ids bio_pfam_ids pfam_ids" (empyt), no matter use protein file (--protein ) or change the protein file…
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"To generate a single negative sample, a random reference bacterium and a random sample from the positive ClusterFinder set were selected. Each gene in the positive sample was replaced with a random g…
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Hi,
I'm running version `0.1.26` and I'm getting the same error as #47
part of error message is below:
```
ERROR 06/07 22:04:58 pfam_id
Traceback (most recent call last):
File "/mnt/…
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Hi,
I currently have deepbgc installed onto a conda environment. The program works but when I run it, I am getting a warning message that looks like the following:
`Using TensorFlow backend.
…
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Our current model is trained on MIBiG 1.4, we can retrain (and validate) the model.
We can also demonstrate how our current model performs on the newly added BGCs.
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First of all thanks for developing DeepBGC and making it available to the community.
I came across a bug in `HmmscanPfamRecordAnnotator` when generating the `proteins_by_id` dictionary. The `util…