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- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (optional) I have confirmed this bug exists on the m…
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Hi there! I have been using your package to create circular dendrograms with heatmaps. I used the sector functionality to chop both the heatmap track and dendrogram track into clusters. I was wonderin…
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Hi!
How are you?
I would like to propose a change for the `_dendrogram.py` file to be able to use `truncate_mode` parameter from scipy.
From their [documentation](https://docs.scipy.org/doc/…
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While following through the readthedocs tutorial, I have some confusion about the dotplot function.
`ns.pl.dotplot(adata, markers_dict, cluster_header, dendrogram = dendrogram, save = True, output_f…
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Clustering test fails on Sunspot. There are two issues:
1. Rounding off error in DBSCAN (#1112)
2. Dendrogram failure
```
arborx/test/tstDendrogram.cpp(187): error:
in "Dendrogram/dendrogra…
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I have modified the patchwork process to let user add their classes for alignment instead of using `is_valid_plot`:
https://github.com/thomasp85/patchwork/blob/6d14415df326a545da4de6140f8433c679eac4…
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Allow users to create dendrograms rather than radial trees. This should allow plotting larger trees, with many more nodes.
- [ ] #115
- [ ] #116
- [ ] #117
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in scipy_dendrogram() the coloring of the branches is still default and looks aweful
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Is there an easy way to change the lable size of the dendrogram by using the command : PDFplot(MS$hc, file = "dendrogram.pdf", cutoffs = c(1-0.79, 1-0.92))? I would like to change it to a smaller font…
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buildTaxonomy() is able to take in the existing dendrogram associated with the taxonomy, but buildPatchseqTaxonomy() doesn’t have this feature. It would be helpful to add a feature in buildPatchseqTax…