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uclahs-cds
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package-CancerEvolutionVisualization
Publication Quality Phylogenetic Tree Plots
https://cran.r-project.org/web/packages/CancerEvolutionVisualization/
GNU General Public License v2.0
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Make mutation and cluster plotting single sample compatible
#166
graceooh
opened
3 days ago
1
Fix bug in simple dendrograms
#165
whelena
closed
5 days ago
0
Add vignettes
#163
whelena
opened
1 week ago
0
Column names for length results in inconsistent behaviour
#162
whelena
closed
1 week ago
1
Add wrapper function for SRCGrob
#161
whelena
closed
2 weeks ago
2
missing x-axis for CCF when length.1 is missing
#160
whelena
opened
2 weeks ago
1
Fish plot polygon bug with 3 children
#159
whelena
opened
3 weeks ago
1
Wrapper function for SRCGrob
#158
whelena
closed
2 weeks ago
0
Clone genome snv count
#157
whelena
closed
1 week ago
1
Expose polygon alpha parameter
#156
whelena
opened
4 weeks ago
3
Option to save trees automatically
#155
whelena
closed
2 weeks ago
0
Automatic gradient color schemes
#154
dan-knight
closed
1 month ago
0
Default node style
#153
dan-knight
closed
1 month ago
0
Use `spread` in dendrogram mode
#152
whelena
closed
1 month ago
0
Fix bug when input is monoclonal
#151
whelena
closed
1 month ago
2
Fix text annotation
#150
whelena
closed
1 month ago
2
Dendrogram bug with <6 nodes
#149
whelena
closed
5 days ago
0
Function to create scale bar
#148
whelena
closed
1 week ago
4
add polygon params
#147
whelena
closed
1 month ago
1
Add polygon params
#146
whelena
closed
2 months ago
0
Aesthetic changes to heatmap and clone genome distribution plot
#145
whelena
closed
1 month ago
0
Scale bar option
#144
whelena
closed
2 weeks ago
0
add R scripts for clone density plot and histogram
#143
WuSelina
opened
2 months ago
0
Alternative node shapes
#142
whelena
opened
2 months ago
0
Fix edge colour matching
#141
whelena
closed
1 month ago
0
Control node size
#140
dan-knight
closed
2 months ago
3
Text annotation not displayed
#139
whelena
closed
1 month ago
0
Inconsistent polygon behaviour when including CP column
#138
whelena
opened
2 months ago
0
Improve readability of default node + node text colours
#137
whelena
closed
4 weeks ago
0
Remove dplyr and stringr dependencies
#136
dan-knight
closed
3 months ago
0
Update changelog to Markdown format
#135
dan-knight
closed
3 months ago
0
Hwinata test dendrogram
#134
whelena
closed
2 months ago
4
Dendrogram mode fails edge case with many clones
#133
whelena
closed
1 month ago
0
Node-by-node control of node rendering ("nodeless" mode)
#132
dan-knight
closed
3 months ago
1
Fix horizontal tree segment rendering bug
#131
dan-knight
opened
4 months ago
0
Error in get.root.node(tree.df) : More than one root node detected.
#130
maotian06
closed
2 weeks ago
1
Hwinata add documentation
#129
whelena
closed
3 months ago
6
Setting default values for heatmaps
#128
whelena
closed
6 months ago
0
Resolve the overlapped node issue
#127
maotian06
opened
6 months ago
0
Upgrade to latest static analysis Action
#126
nwiltsie
closed
6 months ago
0
Node spread
#125
dan-knight
closed
7 months ago
0
Specify Y axis limits
#124
dan-knight
opened
7 months ago
0
Circular angle calculations
#123
dan-knight
closed
6 months ago
2
Bug in auto-scaling?
#122
whelena
closed
6 months ago
0
Combine `v` and `tree` internal data structures
#121
dan-knight
opened
8 months ago
0
Remove extra environments
#120
dan-knight
opened
8 months ago
0
Dendrogram mode
#119
dan-knight
closed
2 months ago
0
Edge intersection style in nodeless mode
#118
dan-knight
opened
9 months ago
6
Refine and document "nodeless" mode
#117
dan-knight
closed
4 weeks ago
1
Dendrogram input arguments
#116
dan-knight
closed
4 weeks ago
0
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