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Dear authors,
Thanks for developing such a great package for dealing with the batch effects and multi-panel integration. While studying the vignette, I have difficulties to make my data similar to …
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@MercifulCode Are there limitations to the annotations that are displayed in the UMAP plot? I think HUMAN does not appear for these example files:
https://github.com/dfci/alignmentviewer/tree/mast…
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### Description
DCFI-CPDM has organoids and cell line models: https://www.dana-farber.org/research/departments-centers-and-labs/integrative-research-centers/center-for-patient-derived-models/brain-…
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hello,
Are you still using this account? We would like to use it as an organization name to host scientific code for this group:
http://rafalab.dfci.harvard.edu/
Thanks!
Michael Love
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I think there's something off with the structural variant profile in GENIE v13-public.
The cohort as a whole shows 15.4% of samples with structural variant data, which seems far too low.
![image](…
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Related to #17 Let's continue with documentation/clean up tasks. Can you make sure your Python code from #17 passes pylint? See this repository for how I run pylint:
https://github.com/dfci/CellBo…
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We would like to be able to add arbitrary clinical attributes of samples to the timeline:
see [mockup slides](https://docs.google.com/presentation/d/1zDGbMQRfOdV4rRUHMEJEzbmEbfEDd8NedsJszzU-zgY…
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@inodb @dippindots i'm still convinced that we should just be aggressively sampling here, that in the context of the study view it's the general curve and that user doesn't need to able to mousover an…
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So I've been trying to understand how the `_report.tsv` is generated from the `_barcode_report.tsv` and the `_cdr3.out` files in the `trust-simplerep.pl` script and I believe that I have correctly det…
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Hi,
I have successfully used DISCOVER with data from whole-exome sequencing. I am wondering whether I can use it with data from targeted sequencing data generated by MSK IMPACT or DFCI OncoPanel. A…
jud-b updated
6 months ago