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In the OptModelInputs object, the _pairwise_matrix requires significant computation time because it computes the distance matrix for the entire well data before then extracting the needed values for t…
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The documentation for `self_distance_array` has the following as the suggested way to reconstruct a full NxN distance matrix from the flattened upper triangular (-diagonal) N*(N-2) // 2 result.
`…
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Hey @gdalle, really cool stuff here!
I am quite interested in GridGraphs for the calculation of ecological connectivity. There is a cool distance metrics that has been introduced recently called th…
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**Comments**
so users can provide their own clustering for samples (e.g., based on UniFrac distance) and features (not sure this is possible; a way to provide their own phylogeny would be awesome but…
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- I ran the unsupervised analysis leaving many of the default parameters unchanged
- One of them causes an error for my pseudobulks with less that that number of cells
```diff
heatmap:
metri…
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@ErikRingen We have discussed this before, but often the model throws (many) positive definite warnings at the beginning of sampling, as shown below. My understanding is that these warnings are harmle…
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### Describe the issue linked to the documentation
## Issue Source:
https://github.com/scikit-learn/scikit-learn/blob/59dd128d4d26fff2ff197b8c1e801647a22e0158/sklearn/cluster/_spectral.py#L452-L…
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Clarabel v0.9.0 reports InsufficientProgress when asked to find the distance between two (very nearly touching, long and thin) polyhedra, expressed as intersections of halfspaces, provided I use a qua…
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Hi!,
so i am working at the following problem i have millions of sparse data points that are very high dimensional.
Using a sparse precomputed distance matrix seems one way to feed this data int…
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Hi,
I am working on analyzing the input distribution and statistical distances outlined in Table3.py and Theorem5.py, and I have encountered a few issues. I would greatly appreciate your insights …